Detailed information of Aala_g330.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP5002498.1, hypothetical protein [Planctomycetota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
P92519Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR014010DomainREJ domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR11467HISTONE H1Interproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030261Biological Processchromosome condensationInterproscan
GO:0031492Molecular Functionnucleosomal DNA bindingInterproscan
GO:0045910Biological Processnegative regulation of DNA recombinationInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22646SLX8; E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8EC:2.3.2.27
Chromosome and associated proteinsko03036deepkoala
Ubiquitin systemko04121deepkoala

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