Gene detail

Detailed information of Aala_g343.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3993669.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q94HW2	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
Q9ZT94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR010921	Homologous_superfamily	Trp repressor/replication initiator	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21567	CLASP	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005881	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan