Gene detail

Detailed information of Aala_g354.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_053390583.1, piggyBac transposable element-derived protein 3-like [Mercenaria mercenaria]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
B5DE31	Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
Q06066	Y-box-binding protein 1 OS=Gallus gallus OX=9031 GN=YBX1 PE=2 SV=1
P62960	Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF14893	PNMA	PNMA	Family	Interproscan
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051877	Family	Centriole and Basal Body Structural Protein	Interproscan
IPR052638	Family	PiggyBac transposable element-derived	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR026079	Family	Cerebellar degeneration-related protein 2	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR048270	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20544	CENTROSOMAL PROTEIN CEP135	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR47055	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19232	CENTROCORTIN FAMILY MEMBER	Interproscan
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26529	F2L; Poxviridae dUTP diphosphatase	EC:3.6.1.23	Ribosome biogenesis	ko03009	deepkoala
			Cell growth	-	deepkoala
			Viral proteins	ko03200	deepkoala