Detailed information of Aala_g374.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3994985.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P24785Dosage compensation regulator mle OS=Drosophila melanogaster OX=7227 GN=mle PE=1 SV=2
Q5R874ATP-dependent RNA helicase A OS=Pongo abelii OX=9601 GN=DHX9 PE=2 SV=1
Q08211ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF03175DNA_pol_B_2DNA polymerase type B, organellar and viralFamilyInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR004868DomainDNA-directed DNA polymerase, family B, mitochondria/virusInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000998DomainMAM domainInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan
PTHR34723PROTEIN CBG17025Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR31511PROTEIN CBG23764Interproscan
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0050684Biological Processregulation of mRNA processingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

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