Gene detail

Detailed information of Aala_g403.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ7386609.1, LMBR1 domain-containing protein 2 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q8MRQ4	LMBR1 domain-containing protein 2 homolog OS=Drosophila melanogaster OX=7227 GN=CG8135 PE=2 SV=2
Q29BL9	LMBR1 domain-containing protein 2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA20843 PE=3 SV=1
Q68DH5	G-protein coupled receptor-associated protein LMBRD2 OS=Homo sapiens OX=9606 GN=LMBRD2 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF04791	LMBR1	LMBR1-like membrane protein	Family	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF03221	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan
PF06862	UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR051584	Family	GPCR-associated LMBR1 domain-containing protein	Interproscan
IPR006876	Family	LMBR1-like membrane protein	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR050863	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR006600	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010678	Family	U3 small nucleolar RNA-associated protein 25	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR21355	UNCHARACTERIZED	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan
PTHR15735	FCH AND DOUBLE SH3 DOMAINS PROTEIN	Interproscan
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR19303	TRANSPOSON	Interproscan
PTHR12933	ORF PROTEIN-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21812	E5; Alphapapillomavirus protein E5	-	Viral proteins	ko03200	deepkoala