Detailed information of Aala_g41.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047735960.1, glutamate [NMDA] receptor subunit 1 [Hyalella azteca]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
E1BMV3Matrilin-1 OS=Bos taurus OX=9913 GN=MATN1 PE=1 SV=4
P51942Matrilin-1 OS=Mus musculus OX=10090 GN=Matn1 PE=2 SV=2
P21941Matrilin-1 OS=Homo sapiens OX=9606 GN=MATN1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00435SpectrinSpectrin repeatDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF02911Formyl_trans_CFormyl transferase, C-terminal domainDomainInterproscan
PF00378ECH_1Enoyl-CoA hydratase/isomeraseDomainInterproscan
PF13961DUF4219Domain of unknown function (DUF4219)DomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF00180Iso_dhIsocitrate/isopropylmalate dehydrogenaseDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF07648Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan
PF07002CopineCopineFamilyInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR029045Homologous_superfamilyClpP/crotonase-like domain superfamilyInterproscan
IPR047180FamilyHydrogenase maturation factor HoxX-likeInterproscan
IPR011034Homologous_superfamilyFormyl transferase-like, C-terminal domain superfamilyInterproscan
IPR005793DomainFormyl transferase, C-terminalInterproscan
IPR001753FamilyEnoyl-CoA hydratase/isomeraseInterproscan
IPR025314DomainDomain of unknown function DUF4219Interproscan
IPR001828DomainReceptor, ligand binding regionInterproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR024084DomainIsopropylmalate dehydrogenase-like domainInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036058Homologous_superfamilyKazal domain superfamilyInterproscan
IPR052229FamilyCollagen VI and Biomineralization Protein PIFInterproscan
IPR002350DomainKazal domainInterproscan
IPR052079FamilyE3 ubiquitin-ligases/Copine domain-containing proteinInterproscan
IPR010734DomainCopine, C-terminalInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR43388HYDROGENASE MATURATION FACTOR HOXXInterproscan
PTHR47481-Interproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR22588UNCHARACTERIZEDInterproscan
PTHR45751COPINE FAMILY PROTEIN 1Interproscan
PTHR45749-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0009058Biological Processbiosynthetic processInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18138acrB, mexB, adeJ, smeE, mtrD, cmeB; multidrug efflux pump-Ubiquitin systemko04121deepkoala
Antimicrobial resistance genesko01504deepkoala

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