Gene detail

Detailed information of Aala_g430.t1 in Alatina alata

Genomic Location: :...
NR annotation: CRK98360.1, CLUMA_CG011720, isoform A [Clunio marinus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q920Q8	Influenza virus NS1A-binding protein homolog OS=Mus musculus OX=10090 GN=Ivns1abp PE=1 SV=2
Q8CHG7	Rap guanine nucleotide exchange factor 2 OS=Mus musculus OX=10090 GN=Rapgef2 PE=1 SV=2
F1M386	Rap guanine nucleotide exchange factor 2 OS=Rattus norvegicus OX=10116 GN=Rapgef2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014010	Domain	REJ domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052201	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR051746	Family	Kelch domain-containing protein 8	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR050145	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24111	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan
PTHR46260	RING-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan
PTHR24235	NEUROPEPTIDE Y RECEPTOR	Interproscan
PTHR23050	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008143	Molecular Function	poly(A) binding	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0008188	Molecular Function	neuropeptide receptor activity	Interproscan
GO:0042923	Molecular Function	neuropeptide binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0030234	Molecular Function	enzyme regulator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14396	PABPN1, PABP2; polyadenylate-binding protein 2	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala
K14396	PABPN1, PABP2; polyadenylate-binding protein 2	-	Messenger RNA biogenesis	ko03019	deepkoala