Detailed information of Aala_g456.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047137140.1, uncharacterized protein LOC101234493 isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P21574Y-box-binding protein 2-A OS=Xenopus laevis OX=8355 GN=ybx2-a PE=1 SV=3
B5DE31Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
P45441Y-box-binding protein 2-B OS=Xenopus laevis OX=8355 GN=ybx2-b PE=1 SV=2
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14893PNMAPNMAFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF03953Tubulin_CTubulin C-terminal domainDomainInterproscan
PF00091TubulinTubulin/FtsZ family, GTPase domainDomainInterproscan
PF12171zf-C2H2_jazZinc-finger double-stranded RNA-bindingFamilyInterproscan
PF01753zf-MYNDMYND fingerDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00225KinesinKinesin motor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR011129DomainCold shock domainInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR036525Homologous_superfamilyTubulin/FtsZ, GTPase domain superfamilyInterproscan
IPR018316DomainTubulin/FtsZ, 2-layer sandwich domainInterproscan
IPR017975Conserved_siteTubulin, conserved siteInterproscan
IPR000217FamilyTubulinInterproscan
IPR002452FamilyAlpha tubulinInterproscan
IPR037103Homologous_superfamilyTubulin/FtsZ-like, C-terminal domainInterproscan
IPR003008DomainTubulin/FtsZ, GTPase domainInterproscan
IPR008280Homologous_superfamilyTubulin/FtsZ, C-terminalInterproscan
IPR023123Homologous_superfamilyTubulin, C-terminalInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR022755DomainZinc finger, double-stranded RNA bindingInterproscan
IPR050888FamilyZinc Finger C2H2-type Transcription RegulatorsInterproscan
IPR002893DomainZinc finger, MYND-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001752DomainKinesin motor domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036961Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027640FamilyKinesin-like proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan
PTHR47481-Interproscan
PTHR11588TUBULINInterproscan
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR24406TRANSCRIPTIONAL REPRESSOR CTCFL-RELATEDInterproscan
PTHR10237DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSINInterproscan
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47968CENTROMERE PROTEIN EInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005874Cellular ComponentmicrotubuleInterproscan
GO:0007017Biological Processmicrotubule-based processInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0005200Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0043035Molecular Functionchromatin insulator sequence bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003777Molecular Functionmicrotubule motor activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07374TUBA; tubulin alpha-Exosomeko04147deepkoala

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