Detailed information of Aala_g472.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH3024040.1, unnamed protein product, partial [Porites evermanni]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q94HW2Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
Q9ZT94Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF00406ADKAdenylate kinaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF20049DUF6451Domain of unknown function (DUF6451)DomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF13358DDE_3DDE superfamily endonucleaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR033690Conserved_siteAdenylate kinase, conserved siteInterproscan
IPR000850FamilyAdenylate kinase/UMP-CMP kinaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR045609DomainDomain of unknown function DUF6451Interproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR026791FamilyDedicator of cytokinesisInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR038717DomainTc1-like transposase, DDE domainInterproscan
IPR052338FamilyTransposase_5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23359NUCLEOTIDE KINASEInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45749-Interproscan
PTHR23317DEDICATOR OF CYTOKINESIS DOCKInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0019205Molecular Functionnucleobase-containing compound kinase activityInterproscan
GO:0004017Molecular Functionadenylate kinase activityInterproscan
GO:0004127Molecular Function(d)CMP kinase activityInterproscan
GO:0004550Molecular Functionnucleoside diphosphate kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006165Biological Processobsolete nucleoside diphosphate phosphorylationInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0043547Biological Processpositive regulation of GTPase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K25646EFCAB9; EF-hand calcium-binding domain-containing protein 9-Cilium and associated proteinsko03037deepkoala

TOP