Detailed information of Aala_g484.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_044172065.1, zinc finger MYM-type protein 1-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5SVZ6Zinc finger MYM-type protein 1 OS=Homo sapiens OX=9606 GN=ZMYM1 PE=1 SV=1
Q6GNT7Golgin subfamily A member 5 OS=Xenopus laevis OX=8355 GN=golga5 PE=2 SV=1
Q3ZU82Golgin subfamily A member 5 OS=Rattus norvegicus OX=10116 GN=Golga5 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box
Ubiquitin FamilyUBD|Alpha-Helix|UIM

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00515TPR_1Tetratricopeptide repeatRepeatInterproscan
PF02190LON_substr_bdgATP-dependent protease La (LON) substrate-binding domain FamilyInterproscan
PF18554PheRS_DBD2PheRS DNA binding domain 2DomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF12775AAA_7P-loop containing dynein motor regionDomainInterproscan
PF17857AAA_lid_1AAA+ lid domainDomainInterproscan
PF09787Golgin_A5Golgin subfamily A member 5Coiled-coilInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF09668Asp_proteaseAspartyl proteaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046336Homologous_superfamilyLon protease, N-terminal domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003111DomainLon protease, N-terminal domainInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR040586DomainPheRS DNA binding domain 2Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR001589Conserved_siteActinin-type actin-binding domain, conserved siteInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR039959FamilyFimbrin/PlastinInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR003903Conserved_siteUbiquitin interacting motifInterproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR041589DomainDynein heavy chain 3, AAA+ lid domainInterproscan
IPR019177FamilyGolgin subfamily A member 5Interproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR051714FamilyCCHC-type Zinc Finger Nucleic Acid BindingInterproscan
IPR019103DomainAspartic peptidase, DDI1-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46114APPLE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23327RING FINGER PROTEIN 127Interproscan
PTHR45749-Interproscan
PTHR19961FIMBRIN/PLASTINInterproscan
PTHR45703DYNEIN HEAVY CHAINInterproscan
PTHR23002ZINC FINGER CCHC DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0032432Cellular Componentactin filament bundleInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0051017Biological Processactin filament bundle assemblyInterproscan
GO:0051639Biological Processactin filament network formationInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0007030Biological ProcessGolgi organizationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0045182Molecular Functiontranslation regulator activityInterproscan
GO:2000767Biological Processpositive regulation of cytoplasmic translationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26529F2L; Poxviridae dUTP diphosphataseEC:3.6.1.23
Viral proteinsko03200deepkoala

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