Detailed information of Aala_g5.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3992128.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q8BGT0Osteopetrosis-associated transmembrane protein 1 OS=Mus musculus OX=10090 GN=Ostm1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyARID

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF12031BAF250_CSWI/SNF-like complex subunit BAF250/Osa RepeatInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF04858TH1TH1 proteinFamilyInterproscan
PF09777OSTMP1Osteopetrosis-associated transmembrane protein 1 precursorFamilyInterproscan
PF00058Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR001606DomainARID DNA-binding domainInterproscan
IPR021906FamilySWI/SNF-like complex subunit BAF250/OsaInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR033388DomainSWI/SNF-like complex subunit BAF250, C-terminalInterproscan
IPR006942FamilyTH1 proteinInterproscan
IPR019172FamilyOsteopetrosis-associated transmembrane protein 1 precursorInterproscan
IPR000033RepeatLDLR class B repeatInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR050778FamilyCueball/EGF/LRP/NidogenInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000515DomainABC transporter type 1, transmembrane domain MetI-likeInterproscan
IPR050352FamilyATP-binding cassette subfamily G transportersInterproscan
IPR044189FamilyExportin 4/7-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR12656BRG-1 ASSOCIATED FACTOR 250 BAF250Interproscan
PTHR12144NEGATIVE ELONGATION FACTOR DInterproscan
PTHR46513VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR48041ABC TRANSPORTER G FAMILY MEMBER 28Interproscan
PTHR37558HTH CENPB-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12596EXPORTIN 4,7-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035060Cellular Componentbrahma complexInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0071565Cellular ComponentnBAF complexInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0032021Cellular ComponentNELF complexInterproscan
GO:0034244Biological Processnegative regulation of transcription elongation by RNA polymerase IIInterproscan
GO:0045892Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0042626Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0005049Molecular Functionnuclear export signal receptor activityInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006611Biological Processprotein export from nucleusInterproscan
GO:0051169Biological Processnuclear transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02911RP-L32, MRPL32, rpmF; large subunit ribosomal protein L32-Ribosomeko03011deepkoala

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