Gene detail

Detailed information of Aala_g500.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAG1653069.1, Peroxisome biogenesis factor 1 [Nymphon striatum]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q8NCM8	Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC2H1 PE=1 SV=4
Q9JJ79	Cytoplasmic dynein 2 heavy chain 1 OS=Rattus norvegicus OX=10116 GN=Dync2h1 PE=1 SV=1
Q45VK7	Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus OX=10090 GN=Dync2h1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF12777	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan
PF17169	NRBF2_MIT	MIT domain of nuclear receptor-binding factor 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR050359	Family	Basic helix-loop-helix transcription factors	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR053336	Family	Rhoptry Surface-Associated Protein	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan
IPR024743	Domain	Dynein heavy chain, coiled coil stalk	Interproscan
IPR033393	Domain	Nuclear receptor-binding factor 2, MIT domain	Interproscan
IPR039679	Family	Nuclear receptor-binding factor 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31511	PROTEIN CBG23764	Interproscan
PTHR19290	BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan
PTHR38681	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR37320	AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE	Interproscan
PTHR10676	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan
PTHR14964	NUCLEAR RECEPTOR BINDING FACTOR 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005868	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0005930	Cellular Component	axoneme	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008569	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0035721	Biological Process	intraciliary retrograde transport	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0060294	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729	Cellular Component	9+2 motile cilium	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02110	ATPF0C, atpE; F-type H+-transporting ATPase subunit c	-	Membrane trafficking	ko04131	deepkoala
			Transcription factors	ko03000	deepkoala
			Photosynthesis proteins	ko00194	deepkoala