Gene detail

Detailed information of Aala_g507.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4040536.1, probable ATP-dependent RNA helicase DDX52 isoform X2, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A5D7C1	Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Q9Y2R4	Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4
Q8K301	Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF14214	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF00749	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan
PF17916	LID	LIM interaction domain (LID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052510	Family	Oomycete RxLR Effector	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053011	Family	Dehydrogenase/reductase SDR family member 7	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR025476	Domain	Helitron helicase-like domain	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR051068	Family	Major Facilitator Superfamily Domain-Containing Protein	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR050132	Family	Glutamine/Glutamate--tRNA Ligase	Interproscan
IPR020058	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR041363	Domain	LIM interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45895	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR44269	DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED	Interproscan
PTHR46114	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45786	DNA BINDING PROTEIN-LIKE	Interproscan
PTHR23510	INNER MEMBRANE TRANSPORT PROTEIN YAJR	Interproscan
PTHR43097	GLUTAMINE-TRNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0004819	Molecular Function	glutamine-tRNA ligase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006425	Biological Process	glutaminyl-tRNA aminoacylation	Interproscan
GO:0017101	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0043039	Biological Process	tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20840	SLC46A3; MFS transporter, PCFT/HCP family, solute carrier family 46, member 3	-	Transporters	ko02000	deepkoala