Detailed information of Aala_g547.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ6659146.1, hypothetical protein lerEdw1_019449 [Lerista edwardsae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A6H6W9Sin3 histone deacetylase corepressor complex component SDS3 OS=Bos taurus OX=9913 GN=SUDS3 PE=2 SV=1
Q9H7L9Sin3 histone deacetylase corepressor complex component SDS3 OS=Homo sapiens OX=9606 GN=SUDS3 PE=1 SV=2
Q8BR65Sin3 histone deacetylase corepressor complex component SDS3 OS=Mus musculus OX=10090 GN=Suds3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF12851Tet_JBPOxygenase domain of the 2OGFeDO superfamily DomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF00168C2C2 domainDomainInterproscan
PF07002CopineCopineFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR024779Domain2OGFeDO JBP1/TET, oxygenase domainInterproscan
IPR040175FamilyMethylcytosine dioxygenase TET1/2/3Interproscan
IPR029052Homologous_superfamilyMetallo-dependent phosphatase-likeInterproscan
IPR006186DomainSerine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphataseInterproscan
IPR051134FamilyProtein Phosphatase PPPInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR052065FamilyComplement and asymmetry regulatorInterproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR037768DomainCopine, C2B domainInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR045052FamilyCopineInterproscan
IPR010734DomainCopine, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23358UNCHARACTERIZEDInterproscan
PTHR45668SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATEDInterproscan
PTHR22906PROPERDINInterproscan
PTHR33198ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR10857COPINEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006211Biological Processobsolete 5-methylcytosine catabolic processInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0070579Molecular Function5-methylcytosine dioxygenase activityInterproscan
GO:0080111Biological Processobsolete DNA demethylationInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0005544Molecular Functioncalcium-dependent phospholipid bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0071277Biological Processcellular response to calcium ionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06424sspG; small acid-soluble spore protein G (minor)-Domain-containing proteins not elsewhere classifiedko04990deepkoala
Cell growth-deepkoala

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