Gene detail

Detailed information of Aala_g569.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_018496864.2, transcription factor SOX-14 [Galendromus occidentalis]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q20201	Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 GN=sox-3 PE=2 SV=1
Q7SZS1	Transcription factor Sox-21-A OS=Danio rerio OX=7955 GN=sox21a PE=2 SV=1
Q21305	Transcription factor sox-2 OS=Caenorhabditis elegans OX=6239 GN=sox-2 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF00291	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan
IPR036052	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR001926	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46114	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan
PTHR43050	SERINE / THREONINE RACEMASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0003941	Molecular Function	L-serine ammonia-lyase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0018114	Molecular Function	threonine racemase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0030378	Molecular Function	serine racemase activity	Interproscan
GO:0070179	Biological Process	D-serine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12235	SRR; serine racemase	EC:5.1.1.18	Prokaryotic defense system	ko02048	deepkoala
K12235	SRR; serine racemase	EC:5.1.1.18	D-Amino acid metabolism	ko00470	deepkoala