Detailed information of Aala_g588.t1 in Alatina alata

Genomic Location: :...
NR annotation: MBN3289911.1, POL2 protein [Polypterus senegalus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8TF64PDZ domain-containing protein GIPC3 OS=Homo sapiens OX=9606 GN=GIPC3 PE=1 SV=1
Q8R5M0PDZ domain-containing protein GIPC3 OS=Mus musculus OX=10090 GN=Gipc3 PE=1 SV=1
O14908PDZ domain-containing protein GIPC1 OS=Homo sapiens OX=9606 GN=GIPC1 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR053134FamilyRNA-directed DNA polymerase homologInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR017379FamilyPDZ domain-containing protein GIPC1/2/3Interproscan
IPR031128DomainE3 ubiquitin-protein ligase RNF14, RING finger, HC subclassInterproscan
IPR002867DomainIBR domainInterproscan
IPR031127FamilyE3 ubiquitin ligase RBR familyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR047548DomainE3 ubiquitin-protein ligase RNF14, Rcat domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan
PTHR47202HISTIDINE-RICH GLYCOPROTEINInterproscan
PTHR12259RGS-GAIP INTERACTING PROTEIN GIPCInterproscan
PTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031624Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0032436Biological Processpositive regulation of proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K27068VP24; Marburgvirus membrane-associated protein VP24-Ubiquitin systemko04121deepkoala
Viral proteinsko03200deepkoala

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