Gene detail

Detailed information of Aala_g6.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_049587334.1, craniofacial development protein 2-like [Syngnathus scovelli]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
Q15477	Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
F4JAA5	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14214	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR025476	Domain	Helitron helicase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR45786	DNA BINDING PROTEIN-LIKE	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0055087	Cellular Component	Ski complex	Interproscan
GO:0070478	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17569	GPATCH2; G patch domain-containing protein 2	-	Protein phosphatases and associated proteins	ko01009	deepkoala