Detailed information of Aala_g624.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_031549204.1, lamin-B1-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P08670Vimentin OS=Homo sapiens OX=9606 GN=VIM PE=1 SV=4
P84198Vimentin OS=Chlorocebus aethiops OX=9534 GN=VIM PE=1 SV=3
Q4R4X4Vimentin OS=Macaca fascicularis OX=9541 GN=VIM PE=2 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00038FilamentIntermediate filament proteinCoiled-coilInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF20662COG4_CConserved oligomeric Golgi complex subunit 4, C-terminalRepeatInterproscan
PF08952DUF1866Domain of unknown function (DUF1866) DomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039008DomainIntermediate filament, rod domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR048684DomainConserved oligomeric Golgi complex subunit 4, C-terminalInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR046985FamilyInositol 5-phosphataseInterproscan
IPR015047DomainSynaptojanin-1/2, RNA recognition motifInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002048DomainEF-hand domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45721LAMIN DM0-RELATEDInterproscan
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR11200INOSITOL 5-PHOSPHATASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004439Molecular Functionphosphatidylinositol-4,5-bisphosphate 5-phosphatase activityInterproscan
GO:0046856Biological Processphosphatidylinositol dephosphorylationInterproscan
GO:0048488Biological Processsynaptic vesicle endocytosisInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan

TOP