Gene detail

Detailed information of Aala_g64.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_022786698.1, protein diaphanous homolog 2-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF04641	Rtf2	Rtf2 RING-finger	Family	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF17906	HTH_48	HTH domain in Mos1 transposase	Domain	Interproscan
PF01359	Transposase_1	Transposase (partial DDE domain)	Family	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF01527	HTH_Tnp_1	Transposase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051320	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR027799	Domain	Replication termination factor 2, RING-finger	Interproscan
IPR006735	Family	Replication termination factor 2	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041426	Domain	Mos1 transposase, HTH domain	Interproscan
IPR052709	Family	Transposase-Methyltransferase Hybrid	Interproscan
IPR001888	Family	Transposase, type 1	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR044933	Homologous_superfamily	Diaphanous, GTPase-binding domain superfamily	Interproscan
IPR001388	Family	Synaptobrevin-like	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050848	Family	Homeobox domain-containing transcription factors	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR002514	Family	Transposase IS3/IS911family	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064	POL PROTEIN	Interproscan
PTHR12775	PROTEIN C20ORF43 HOMOLOG	Interproscan
PTHR47272	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46060	MARINER MOS1 TRANSPOSASE-LIKE PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan
PTHR24333	HOMEO BOX HB9 LIKE A-RELATED	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0071171	Biological Process	site-specific DNA replication termination at RTS1 barrier	Interproscan
GO:1902979	Biological Process	mitotic DNA replication termination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0004803	Molecular Function	transposase activity	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11433	SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR	EC:2.1.1.357	DNA replication proteins	ko03032	deepkoala
			Membrane trafficking	ko04131	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala