Detailed information of Aala_g642.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH1242229.1, ECEL1 [Branchiostoma lanceolatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q95SX7Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
Q9Y4C8Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034423DomainProbable RNA-binding protein 19, RNA recognition motif 5Interproscan
IPR051945FamilyRRM MRD1 RNA Processing and Ribosome BiogenesisInterproscan
IPR034421DomainProbable RNA-binding protein 19, RNA recognition motif 6Interproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR016098Homologous_superfamilyCyclase-associated protein CAP/septum formation inhibitor MinC, C-terminalInterproscan
IPR039093FamilyProtein XRP2Interproscan
IPR036640Homologous_superfamilyABC transporter type 1, transmembrane domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48039RNA-BINDING MOTIF PROTEIN 14BInterproscan
PTHR33064POL PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR15440XRP2 PROTEINInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR31511PROTEIN CBG23764Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0006892Biological Processpost-Golgi vesicle-mediated transportInterproscan
GO:1990075Cellular Componentpericiliary membrane compartmentInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14787MRD1, RBM19; multiple RNA-binding domain-containing protein 1-Ribosome biogenesisko03009deepkoala

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