Gene detail

Detailed information of Aala_g658.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_014672322.1, PREDICTED: uncharacterized protein LOC106812853 [Priapulus caudatus]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q3B8Q1	Nucleolar RNA helicase 2 OS=Rattus norvegicus OX=10116 GN=Ddx21 PE=2 SV=1
Q9JIK5	Nucleolar RNA helicase 2 OS=Mus musculus OX=10090 GN=Ddx21 PE=1 SV=3
Q9NR30	Nucleolar RNA helicase 2 OS=Homo sapiens OX=9606 GN=DDX21 PE=1 SV=5

Gene family	Subfamily
Transcription Factors Family	CBF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00538	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan
PF02312	CBF_beta	Core binding factor beta subunit	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF03024	Folate_rec	Folate receptor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005818	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR005819	Family	Linker histone H1/H5	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036552	Homologous_superfamily	Core-binding factor, beta subunit superfamily	Interproscan
IPR003417	Family	Core-binding factor, beta subunit	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011041	Homologous_superfamily	Soluble quinoprotein glucose/sorbosone dehydrogenase	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR018143	Domain	Folate receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11467	HISTONE H1	Interproscan
PTHR10276	CORE-BINDING FACTOR, BETA SUBUNIT	Interproscan
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24412	KELCH PROTEIN	Interproscan
PTHR46601	ULP_PROTEASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24126	ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED	Interproscan
PTHR19328	HEDGEHOG-INTERACTING PROTEIN	Interproscan
PTHR46704	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030261	Biological Process	chromosome condensation	Interproscan
GO:0031492	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0045910	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016513	Cellular Component	core-binding factor complex	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11275	H1_5; histone H1/5	-	Spliceosome	ko03041	deepkoala
K11275	H1_5; histone H1/5	-	Chromosome and associated proteins	ko03036	deepkoala