Detailed information of Aala_g659.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ7347142.1, DNA-directed RNA polymerase II subunit RPB2, partial [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8CFI7DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2
A5PJW8DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13602ADH_zinc_N_2Zinc-binding dehydrogenaseDomainInterproscan
PF08240ADH_NAlcohol dehydrogenase GroES-like domainDomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF00012HSP70Hsp70 proteinFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF14777BBIP10Cilia BBSome complex subunit 10FamilyInterproscan
PF00059Lectin_CLectin C-type domainDomainInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF10211Ax_dynein_lightAxonemal dynein light chainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR011032Homologous_superfamilyGroES-like superfamilyInterproscan
IPR020843DomainPolyketide synthase, enoylreductase domainInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR002364Conserved_siteQuinone oxidoreductase/zeta-crystallin, conserved siteInterproscan
IPR050700FamilyYIM1 and Zinc-containing Alcohol Dehydrogenase FamiliesInterproscan
IPR013154DomainAlcohol dehydrogenase-like, N-terminalInterproscan
IPR037397FamilyReticulon-4-interacting protein 1Interproscan
IPR052638FamilyPiggyBac transposable element-derivedInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR050940FamilyActin-regulating Serine/Threonine KinaseInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR018181Conserved_siteHeat shock protein 70, conserved siteInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR013126FamilyHeat shock protein 70 familyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR028233FamilyCilia BBSome complex subunit 10Interproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR001304DomainC-type lectin-likeInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR011049Homologous_superfamilySerralysin-like metalloprotease, C-terminalInterproscan
IPR014724Homologous_superfamilyRNA polymerase Rpb2, OB-foldInterproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR052845FamilyAxonemal dynein light chain domain-containing proteinInterproscan
IPR019347FamilyAxonemal dynein light chainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR11695ALCOHOL DEHYDROGENASE RELATEDInterproscan
PTHR47055DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR46485LIM DOMAIN KINASE 1Interproscan
PTHR19375HEAT SHOCK PROTEIN 70KDAInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR28596BBSOME-INTERACTING PROTEIN 1Interproscan
PTHR45784C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATEDInterproscan
PTHR23052UNCHARACTERIZEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140662Molecular FunctionATP-dependent protein folding chaperoneInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0034464Cellular ComponentBBSomeInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0097500Biological Processreceptor localization to non-motile ciliumInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23164RTN4IP1; reticulon-4-interacting protein 1, mitochondrial-Mitochondrial biogenesisko03029deepkoala

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