Gene detail

Detailed information of Aala_g67.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP4460515.1, reverse transcriptase family protein [Cytophagales bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P0C1H4	Histone H2B 5 OS=Gallus gallus OX=9031 GN=H2B-V PE=1 SV=2
Q9PSW9	Histone H2B 8 OS=Gallus gallus OX=9031 GN=H2B-VIII PE=1 SV=3
Q6PC60	Histone H2B 3 OS=Danio rerio OX=7955 GN=hist2h2l PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00125	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005819	Family	Linker histone H1/H5	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR000558	Family	Histone H2B	Interproscan
IPR007125	Domain	Histone H2A/H2B/H3	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR23428	HISTONE H2B	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11252	H2B; histone H2B	-	Exosome	ko04147	deepkoala