Gene detail

Detailed information of Aala_g676.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFN76738.1, retrovirus-related pol polyprotein from type-1 retrotransposable element r2 [Plakobranchus ocellatus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q03278	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10034	Dpy19	Q-cell neuroblast polarisation	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02803	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan
PF14473	RD3	RD3 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052717	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR018732	Family	Dpy-19/Dpy-19-like	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR020617	Domain	Thiolase, C-terminal	Interproscan
IPR000305	Domain	GIY-YIG endonuclease	Interproscan
IPR028092	Family	Retinal degeneration protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46169	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR18919	ACETYL-COA C-ACYLTRANSFERASE	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR28489	RENTINAL DEGENERATION 3-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003985	Molecular Function	acetyl-CoA C-acetyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14479	EP; procyclin	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala