Gene detail

Detailed information of Aala_g694.t1 in Alatina alata

Genomic Location: :...
NR annotation: HCX22453.1, hypothetical protein [Cytophagales bacterium]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q8IUH3	RNA-binding protein 45 OS=Homo sapiens OX=9606 GN=RBM45 PE=1 SV=1
Q8CFD1	RNA-binding protein 45 OS=Rattus norvegicus OX=10116 GN=Rbm45 PE=1 SV=1
Q8BHN5	RNA-binding protein 45 OS=Mus musculus OX=10090 GN=Rbm45 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00907	T-box	T-box	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan
IPR034208	Domain	RBM45, RNA recognition motif 4	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034207	Domain	RBM45, RNA recognition motif 3	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan
PTHR38681	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25081	RBM45; RNA-binding protein 45	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala