Detailed information of Aala_g7.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047144979.1, YTH domain-containing family protein 2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P59326YTH domain-containing family protein 1 OS=Mus musculus OX=10090 GN=Ythdf1 PE=1 SV=1
Q9Y5A9YTH domain-containing family protein 2 OS=Homo sapiens OX=9606 GN=YTHDF2 PE=1 SV=2
Q4R5D9YTH domain-containing family protein 2 OS=Macaca fascicularis OX=9541 GN=YTHDF2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04146YTHYT521-B-like domainDomainInterproscan
PF01423LSMLSM domain DomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF02023SCANSCAN domainDomainInterproscan
PF14704DERMDermatopontinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007275DomainYTH domainInterproscan
IPR045168FamilyYTH domain containing proteinInterproscan
IPR047575DomainSm domainInterproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR034103DomainSm-like protein Lsm8Interproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR044642FamilyU6 snRNA-associated Sm-like protein Lsm1/8Interproscan
IPR002048DomainEF-hand domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR038269Homologous_superfamilySCAN domain superfamilyInterproscan
IPR003309DomainSCAN domainInterproscan
IPR026645FamilyDermatopontinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12357YTH YT521-B HOMOLOGY DOMAIN-CONTAININGInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR15588LSM1Interproscan
PTHR46888ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0061157Biological ProcessmRNA destabilizationInterproscan
GO:1990247Molecular FunctionN6-methyladenosine-containing RNA reader activityInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12627LSM8; U6 snRNA-associated Sm-like protein LSm8-Messenger RNA biogenesisko03019deepkoala
Spliceosomeko03041deepkoala

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