Detailed information of Aala_g708.t1 in Alatina alata

Genomic Location: :...
NR annotation: MBF0269894.1, FAD-binding protein [Alphaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A6H584Collagen alpha-5(VI) chain OS=Mus musculus OX=10090 GN=Col6a5 PE=1 SV=4
Q99715Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2
Q60847Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07926TPR_MLP1_2TPR/MLP1/MLP2-like proteinCoiled-coilInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012929DomainNucleoprotein TPR/MLP1Interproscan
IPR036318Homologous_superfamilyFAD-binding, type PCMH-like superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050995FamilyWD repeat and F-box domain-containing proteinInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18898NUCLEOPROTEIN TPR-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR24020COLLAGEN ALPHAInterproscan
PTHR14604WD40 REPEAT PF20Interproscan
PTHR23227BUCENTAUR RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006406Biological ProcessmRNA export from nucleusInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26675FSIP2; fibrous sheath-interacting protein 2-Cilium and associated proteinsko03037deepkoala

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