Detailed information of Aala_g729.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4004345.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q9ZT94Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00887ACBPAcyl CoA binding proteinDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF01541GIY-YIGGIY-YIG catalytic domainDomainInterproscan
PF00630FilaminFilamin/ABP280 repeatDomainInterproscan
PF10551MULEMULE transposase domainDomainInterproscan
PF04500FLYWCHFLYWCH zinc finger domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035984Homologous_superfamilyAcyl-CoA binding protein superfamilyInterproscan
IPR000582DomainAcyl-CoA-binding protein, ACBPInterproscan
IPR014352Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR000305DomainGIY-YIG endonucleaseInterproscan
IPR035901Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR017868RepeatFilamin/ABP280 repeat-likeInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR018289DomainMULE transposase domainInterproscan
IPR007588DomainZinc finger, FLYWCH-typeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR039761FamilyRibosome biogenesis protein Bms1/Tsr1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23310ACYL-COA-BINDING PROTEIN, ACBPInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR16165NXPE FAMILY MEMBERInterproscan
PTHR47160PUTATIVE-RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR12858RIBOSOME BIOGENESIS PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000062Molecular Functionfatty-acyl-CoA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006631Biological Processfatty acid metabolic processInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000479Biological Processendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0034511Molecular FunctionU3 snoRNA bindingInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan

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