Genomic Location: :...
NR annotation: CAB4007695.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]
| CDS | |||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 |
| Q60847 | Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF13843 | DDE_Tnp_1_7 | Transposase IS4 | Domain | Interproscan |
| PF00092 | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF14291 | DUF4371 | Domain of unknown function (DUF4371) | Family | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | Domain | Interproscan |
| PF14244 | Retrotran_gag_3 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| PF00098 | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF00520 | Ion_trans | Ion transport protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR052638 | Family | PiggyBac transposable element-derived | Interproscan |
| IPR029526 | Domain | PiggyBac transposable element-derived protein | Interproscan |
| IPR052229 | Family | Collagen VI and Biomineralization Protein PIF | Interproscan |
| IPR002035 | Domain | von Willebrand factor, type A | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR035901 | Homologous_superfamily | GIY-YIG endonuclease superfamily | Interproscan |
| IPR025398 | Domain | Domain of unknown function DUF4371 | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR025724 | Domain | GAG-pre-integrase domain | Interproscan |
| IPR029472 | Domain | Retrotransposon Copia-like, N-terminal | Interproscan |
| IPR013103 | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR002153 | Family | Transient receptor potential channel, canonical | Interproscan |
| IPR005821 | Domain | Ion transport domain | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19446 | REVERSE TRANSCRIPTASES | Interproscan |
| PTHR47055 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR22588 | UNCHARACTERIZED | Interproscan |
| PTHR47018 | CXC DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR21301 | REVERSE TRANSCRIPTASE | Interproscan |
| PTHR45749 | - | Interproscan |
| PTHR42648 | TRANSPOSASE, PUTATIVE-RELATED | Interproscan |
| PTHR10117 | TRANSIENT RECEPTOR POTENTIAL CHANNEL | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0043565 | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0005262 | Molecular Function | calcium channel activity | Interproscan |
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| GO:0005887 | Cellular Component | plasma membrane | Interproscan |
| GO:0015279 | Molecular Function | store-operated calcium channel activity | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0034703 | Cellular Component | cation channel complex | Interproscan |
| GO:0051480 | Biological Process | regulation of cytosolic calcium ion concentration | Interproscan |
| GO:0070588 | Biological Process | calcium ion transmembrane transport | Interproscan |
| GO:0070679 | Molecular Function | inositol 1,4,5 trisphosphate binding | Interproscan |
| GO:0005216 | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 | Biological Process | monoatomic ion transport | Interproscan |
| GO:0055085 | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K25228 | APC15, ANAPC15; anaphase-promoting complex subunit 15 | - | Ribosome | ko03011 | deepkoala |
| Pyruvate metabolism | ko00620 | deepkoala | |||
| Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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