Detailed information of Aala_g741.t1 in Alatina alata

Genomic Location: :...
NR annotation: RXN28005.1, zinc finger MYM-type 1-like protein [Labeo rohita]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A8JF70Outer dynein arm protein 1 OS=Chlamydomonas reinhardtii OX=3055 GN=ODA1 PE=1 SV=1
Q2T9W3Coiled-coil domain-containing protein 63 OS=Bos taurus OX=9913 GN=CCDC63 PE=2 SV=1
Q8CDV6Coiled-coil domain-containing protein 63 OS=Mus musculus OX=10090 GN=Ccdc63 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00704Glyco_hydro_18Glycosyl hydrolases family 18DomainInterproscan
PF01857RB_BRetinoblastoma-associated protein B domainDomainInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF21773DUF6872Domain of unknown function (DUF6872)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR035437Homologous_superfamilySNase-like, OB-fold superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR029066Homologous_superfamilyPLP-binding barrelInterproscan
IPR009006Homologous_superfamilyAlanine racemase/group IV decarboxylase, C-terminalInterproscan
IPR001579Active_siteGlycosyl hydrolases family 18 (GH18) active siteInterproscan
IPR017853Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR001223DomainGlycoside hydrolase family 18, catalytic domainInterproscan
IPR011583DomainChitinase IIInterproscan
IPR029070Homologous_superfamilyChitinase insertion domain superfamilyInterproscan
IPR050314FamilyGlycosyl Hydrolase Family 18Interproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR028309FamilyRetinoblastoma protein familyInterproscan
IPR002719DomainRetinoblastoma-associated protein, B-boxInterproscan
IPR000558FamilyHistone H2BInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR049258DomainODAD1, central coiled coil regionInterproscan
IPR051876FamilyOuter dynein arm-docking/Coiled-coil domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR11177CHITINASEInterproscan
PTHR13742RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDInterproscan
PTHR23428HISTONE H2BInterproscan
PTHR21694UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0004568Molecular Functionchitinase activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0006032Biological Processchitin catabolic processInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0051726Biological Processregulation of cell cycleInterproscan
GO:2000134Biological Processnegative regulation of G1/S transition of mitotic cell cycleInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11252H2B; histone H2B-Amino sugar and nucleotide sugar metabolismko00520deepkoala
Exosomeko04147deepkoala

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