Gene detail

Detailed information of Aala_g773.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ8707990.1, hypothetical protein PYW08_010356 [Mythimna loreyi]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9NW13	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3
Q8CGC6	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4
O74400	Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC4F6.14 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF04658	TAFII55_N	TAFII55 protein conserved region	Family	Interproscan
PF12781	AAA_9	ATP-binding dynein motor region	Domain	Interproscan
PF13820	NCOA6_TRADD-N	Nuclear receptor coactivator 6, TRADD-N domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00194	Carb_anhydrase	Eukaryotic-type carbonic anhydrase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR006751	Domain	TAFII55 protein, conserved region	Interproscan
IPR037817	Family	Transcription initiation factor TFIID subunit 7	Interproscan
IPR051860	Family	Plasmodium Circumsporozoite Invasion Protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan
IPR035706	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan
IPR032715	Domain	Nuclear receptor coactivator 6, TRADD-N domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036716	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR001148	Domain	Alpha carbonic anhydrase domain	Interproscan
IPR036398	Homologous_superfamily	Alpha carbonic anhydrase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR12228	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	Interproscan
PTHR44826	SPORE COAT PROTEIN SP85	Interproscan
PTHR46961	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0090729	Molecular Function	toxin activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03132	TAF7; transcription initiation factor TFIID subunit 7	-	Transcription machinery	ko03021	deepkoala
K03132	TAF7; transcription initiation factor TFIID subunit 7	-	Chromosome and associated proteins	ko03036	deepkoala