Gene detail

Detailed information of Aala_g799.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_006816946.1, PREDICTED: LOW QUALITY PROTEIN: rhophilin-2-like [Saccoglossus kowalevskii]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8HXG3	Rhophilin-2 OS=Canis lupus familiaris OX=9615 GN=RHPN2 PE=2 SV=1
Q8IUC4	Rhophilin-2 OS=Homo sapiens OX=9606 GN=RHPN2 PE=1 SV=1
A4FUC9	Rhophilin-2 OS=Bos taurus OX=9913 GN=RHPN2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain	Family	Interproscan
PF01479	S4	S4 domain	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001912	Domain	Small ribosomal subunit protein uS4, N-terminal	Interproscan
IPR022801	Family	Small ribosomal subunit protein uS4	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR047138	Family	Rhophilin-1/2	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR33683	1, PUTATIVE-RELATED	Interproscan
PTHR11831	30S 40S RIBOSOMAL PROTEIN	Interproscan
PTHR13491	ZCCHC10 PROTEIN	Interproscan
PTHR23031	RHOPHILIN	Interproscan
PTHR47160	PUTATIVE-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034457	Cellular Component	Mpp10 complex	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0051497	Biological Process	negative regulation of stress fiber assembly	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14560	IMP3; U3 small nucleolar ribonucleoprotein protein IMP3	-	Viral proteins	ko03200	deepkoala
K14560	IMP3; U3 small nucleolar ribonucleoprotein protein IMP3	-	Ribosome biogenesis	ko03009	deepkoala