Detailed information of Aala_g803.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP3667059.1, DDE-type integrase/transposase/recombinase [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q94HW2Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
Q9ZT94Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00289Biotin_carb_NBiotin carboxylase, N-terminal domainDomainInterproscan
PF02786CPSase_L_D2Carbamoyl-phosphate synthase L chain, ATP binding domainDomainInterproscan
PF00566RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR013815Homologous_superfamilyATP-grasp fold, subdomain 1Interproscan
IPR011764DomainBiotin carboxylation domainInterproscan
IPR005481DomainBiotin carboxylase-like, N-terminal domainInterproscan
IPR011761DomainATP-grasp foldInterproscan
IPR005930FamilyPyruvate carboxylaseInterproscan
IPR016185Homologous_superfamilyPre-ATP-grasp domain superfamilyInterproscan
IPR005479DomainCarbamoyl-phosphate synthetase large subunit-like, ATP-binding domainInterproscan
IPR035969Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR050302FamilyRab GTPase-activating TBC domain-containing proteinInterproscan
IPR000195DomainRab-GAP-TBC domainInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR37162HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATEDInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR43778PYRUVATE CARBOXYLASEInterproscan
PTHR47219RAB GTPASE-ACTIVATING PROTEIN 1-LIKEInterproscan
PTHR23507ZGC:174356Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0004736Molecular Functionpyruvate carboxylase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006090Biological Processpyruvate metabolic processInterproscan
GO:0006094Biological ProcessgluconeogenesisInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20840SLC46A3; MFS transporter, PCFT/HCP family, solute carrier family 46, member 3-Transportersko02000deepkoala

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