Gene detail

Detailed information of Aala_g834.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCH9665805.1, hypothetical protein [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q07793	Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-DR4 PE=3 SV=2
Q07163	Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00211	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan
PF05178	Kri1	KRI1-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR034132	Domain	Retropepsin Saci-like domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018488	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR050503	Family	cAMP-dependent kinase regulatory chain	Interproscan
IPR029787	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR001054	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR050401	Family	Cyclic nucleotide synthase	Interproscan
IPR018034	Family	KRR1 interacting protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR35378	UNNAMED PRODUCT	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11635	CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN	Interproscan
PTHR11920	GUANYLYL CYCLASE	Interproscan
PTHR14490	ZINC FINGER, ZZ TYPE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0004862	Molecular Function	cAMP-dependent protein kinase inhibitor activity	Interproscan
GO:0005952	Cellular Component	cAMP-dependent protein kinase complex	Interproscan
GO:0030552	Molecular Function	cAMP binding	Interproscan
GO:0034236	Molecular Function	protein kinase A catalytic subunit binding	Interproscan
GO:2000480	Biological Process	negative regulation of cAMP-dependent protein kinase activity	Interproscan
GO:0009190	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0001653	Molecular Function	peptide receptor activity	Interproscan
GO:0004016	Molecular Function	adenylate cyclase activity	Interproscan
GO:0004383	Molecular Function	guanylate cyclase activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006182	Biological Process	cGMP biosynthetic process	Interproscan
GO:0007168	Biological Process	receptor guanylyl cyclase signaling pathway	Interproscan
GO:0000447	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan