Gene detail

Detailed information of Aala_g850.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_015777290.1, PREDICTED: probable global transcription activator SNF2L2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A7Z019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1
Q3TKT4	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Mus musculus OX=10090 GN=Smarca4 PE=1 SV=1
Q8K1P7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Rattus norvegicus OX=10116 GN=Smarca4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF00130	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00169	PH	PH domain	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR002219	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR046349	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050863	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR34239	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24322	PKSB	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR22968	PROTEIN KINASE C, MU	Interproscan
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan
PTHR19303	TRANSPOSON	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00019	BDH1, bdhA; 3-hydroxybutyrate dehydrogenase	EC:1.1.1.30	Butanoate metabolism	ko00650	deepkoala