Gene detail

Detailed information of Aala_g852.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH1239184.1, Hypp5751 [Branchiostoma lanceolatum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
D3K0R6	Plasma membrane calcium-transporting ATPase 4 OS=Bos taurus OX=9913 GN=ATP2B4 PE=1 SV=2
Q6Q477	Plasma membrane calcium-transporting ATPase 4 OS=Mus musculus OX=10090 GN=Atp2b4 PE=1 SV=1
Q64542	Plasma membrane calcium-transporting ATPase 4 OS=Rattus norvegicus OX=10116 GN=Atp2b4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00690	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF01549	ShK	ShK domain-like	Domain	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF01498	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR051547	Family	Tyrosyl-DNA phosphodiesterase 2-like	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR004014	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR001757	Family	P-type ATPase	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR003582	Domain	ShKT domain	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002492	Domain	Transposase, Tc1-like	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR006201	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR15822	TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24093	CATION TRANSPORTING ATPASE	Interproscan
PTHR10127	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR18945	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005388	Molecular Function	P-type calcium transporter activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006874	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0019829	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0051480	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005231	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005254	Molecular Function	chloride channel activity	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007268	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391	Biological Process	regulation of membrane potential	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0045202	Cellular Component	synapse	Interproscan
GO:0050877	Biological Process	nervous system process	Interproscan
GO:1902476	Biological Process	chloride transmembrane transport	Interproscan
GO:1904315	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan