Detailed information of Aala_g880.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ8018654.1, Zinc finger MYM-type protein 1 [Holothuria leucospilota]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q56A18SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Rattus norvegicus OX=10116 GN=Smarce1 PE=1 SV=1
Q969G3SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Homo sapiens OX=9606 GN=SMARCE1 PE=1 SV=2
O54941SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Mus musculus OX=10090 GN=Smarce1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF05064Nsp1_CNsp1-like C-terminal regionFamilyInterproscan
PF13393tRNA-synt_HisHistidyl-tRNA synthetaseDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF12745HGTP_anticodon2Anticodon binding domain of tRNAsDomainInterproscan
PF05387Chorion_3Chorion family 3FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR052958FamilyInterferon-induced PKR regulatorInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR026010FamilyNucleoporin NSP1/NUP62Interproscan
IPR007758DomainNucleoporin, NSP1-like, C-terminalInterproscan
IPR014010DomainREJ domainInterproscan
IPR041715DomainClass II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domainInterproscan
IPR050339FamilyCell Cycle and Stress Response KinaseInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR045864Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR024435DomainHistidyl tRNA synthetase-related domainInterproscan
IPR036621Homologous_superfamilyAnticodon-binding domain superfamilyInterproscan
IPR008449FamilyChorion S36/S38Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR4628952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATEDInterproscan
PTHR46232SMARCE1 REGULATOR OF CHROMATINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12084NUCLEAR PORE GLYCOPROTEIN P62-RELATEDInterproscan
PTHR11042EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATEDInterproscan
PTHR12550HEPATOMA-DERIVED GROWTH FACTOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan
GO:0016922Molecular Functionnuclear receptor bindingInterproscan
GO:0031492Molecular Functionnucleosomal DNA bindingInterproscan
GO:0045892Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005543Molecular Functionphospholipid bindingInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0044613Cellular Componentnuclear pore central transport channelInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0004694Molecular Functioneukaryotic translation initiation factor 2alpha kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0010998Biological Processregulation of translational initiation by eIF2 alpha phosphorylationInterproscan
GO:1990625Biological Processnegative regulation of cytoplasmic translational initiation in response to stressInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16196EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4EC:2.7.11.1
Protein kinasesko01001deepkoala

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