Gene detail

Detailed information of Aala_g898.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_046843592.1, 30S ribosomal protein S17-like [Xenia sp. Carnegie-2017]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
B7IHV5	Small ribosomal subunit protein uS17 OS=Thermosipho africanus (strain TCF52B) OX=484019 GN=rpsQ PE=3 SV=1
A6LLM2	Small ribosomal subunit protein uS17 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rpsQ PE=3 SV=1
Q0BUP1	Small ribosomal subunit protein uS17 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=rpsQ PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF08517	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan
PF00366	Ribosomal_S17	Ribosomal protein S17	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR003652	Domain	Ataxin, AXH domain	Interproscan
IPR036096	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR039655	Family	HMG box-containing protein 1	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000266	Family	Small ribosomal subunit protein uS17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40380	FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR15499	HMG BOX-CONTAINING PROTEIN 1	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11299	HMGN1; high-mobility group nucleosome-binding domain-containing protein 1	-	Ribosome	ko03011	deepkoala
K11299		-	Chromosome and associated proteins	ko03036	deepkoala