Gene detail

Detailed information of Aala_g932.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_044167086.1, uncharacterized protein LOC122951111 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O60524	Ribosome quality control complex subunit NEMF OS=Homo sapiens OX=9606 GN=NEMF PE=1 SV=4
Q8CCP0	Ribosome quality control complex subunit NEMF OS=Mus musculus OX=10090 GN=Nemf PE=1 SV=2
Q9VBX1	Ribosome quality control complex subunit NEMF homolog OS=Drosophila melanogaster OX=7227 GN=Clbn PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF06155	GBBH-like_N	Gamma-butyrobetaine hydroxylase-like, N-terminal	Domain	Interproscan
PF02944	BESS	BESS motif	Motif	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR051608	Family	Ribosome Quality Control Complex Subunit NEMF	Interproscan
IPR038492	Homologous_superfamily	GBBH-like, N-terminal domain superfamily	Interproscan
IPR010376	Domain	Gamma-butyrobetaine hydroxylase-like, N-terminal	Interproscan
IPR042098	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR004210	Domain	BESS motif	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050167	Family	Serine/threonine-protein kinase	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR15239	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	Interproscan
PTHR23257	SERINE-THREONINE PROTEIN KINASE	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20803	UBE3D; ubiquitin-protein ligase E3 D	EC:2.3.2.26	Cytoskeleton proteins	ko04812	deepkoala
			Protein kinases	ko01001	deepkoala
			Purine metabolism	ko00230	deepkoala
			Ubiquitin system	ko04121	deepkoala