Gene detail

Detailed information of Acti_006291-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_174:289510...293856
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_006291-T1

ATGTCGCATAATGGCGAAATCAATACTCGTAGTGGCAATTACAATTGGATGATAGCCCGTGAAGGCACTTTTGCTAGTGAAATTTTAGGTGCTGATTTACACAAAACTTTGCCAGTAATTGAAGAAGATGTTTCTGATTCTGGCAGTTTTGACAATGTTTTAGAGTTTTTGATGGCAAATGGTCGTAGTTTAGCAGAGTCTATTTTAATGATGGTGCCTCAGGCTTGGCAAAATGACACGCAAATGAGCGATGACAAAAAGGCTTTTTATGAATATTTTGCAAATATTATGGAACCATGGGACGGTCCTGCTTCAATTTCATTTGCTGATGGACGCCAAATTGGTGCTGTGCTTGATAGAAACGGTTTGCGTCCTTCGCGTTATTATGAAACTTTTGATAATCGTATTATTATGGCGAGTGAAATTGGCGTGGTTGATGTTGCTGCTGATAATATTAAATCCAAAGGTAGATTGCAACCTGGAAAAATGTTTTTAGTAGATTTTGAGAAAGGCAAAATGATTGATGATGAAACCATCAAAACTGAATTTGCCGCCAAAAACCCTTATAGAAAATGGCTAAATGATAATCAAATTCACATTGATGATTTAGCAAATGGCAAGGTTAGCAATGCTATTGATTTAAAATATGGCTTAAAAACTTTTGGTTATTCAACCGAACGAATGGATTTTATGCTCAAACCTCTTGTTAAAGATGGTAGAGACCCTGTTGGTTCAATGGGAAATGACACCGCCCTTAGTTGTATGAGTGATAAACCACGTTTGATTTATGATTATTTTAAACAACTTTTCGCCCAAGTAACCAACCCTCCAATTGACTCAATTCGTGAAGAAATCGTTATGTCGCTTAAAACTTGCATTGCCCCTAGCGGTAATTTATTAAAAGATGTTCCTGAAAATGCCAAAAGATTGGTGATTGAAAGCCCTATTTTAAGCAATGAAAATCTAGCCAAAATCCGCAATCAAACTATTTGGAGTGTTGGCGAAATTGATATTACCTATGAAATTGGTGAAGTTGATATTAAAAACGAACTTGATAGAATTTGTAAATTAAGTGTTGAATTTATCAAAAATGGCAAAGGTTTTATTGTTTTAAGTGATAAAAATATCTCCAAATCTCGCGCCCCAATTAGTCCATTTTTGGCAGCAGGTGCTATCCACCAACACCTTATAAAATCTCATCTTCGCACTCAAACTAGTATAATTGTAGAAAGTGGTGAAGTTGCCGAAGTGCATCACTTTTGTCTGCTAACTGGTTTTGGCGTTGATGCTATCAATCCATATTTAGCATTTGCCACACTCTTTGATGCTAATAAAGATTACGAACTAGCAAAAACCAACGATGAAATAGTTACTCTATATATCAAAAGTGTCAATAAAGGTATGCTTAAAGTTATGGCAAAAATGGGAGTTTCTACGCTGGAATCATACAAAGGCGCACAAATTTTTGAGGCAGTAGGAATTGCCACCGAAGTTATGGAAGTATGTTGGACTGGCACGCAATCACGCATTGGTGGTGTTGATTTTGCAACCTTGCAAATTGAAAATGAAACGCGTCATAAAACTGCATTTTTTGATGAAATTTTAGGCAGTCAAGGACAATATCATTGGCGTGATGGTGGCGAAGTGCATATGTGGGAACCACAAGTTATTACCGATTTGCAACTAGCATCAAGACTTAATGACAAAGAAAAATATCAAGCATTTGCAAAAAGAACCAATGAAGAACTCACCAAAAAAGCCACTTTACGCGGTTTGATGAAGTTCAAAAATCAGAAAAATATTGATATTTCAGAAGTAGAGTCAGTAAGCGAAATAGTCAAAAGATTTGCAACTGGTGCTATGAGTTTTGGTTCAATATCGGCAGAATCTCACGAAAGCTTGGCAATTGCTATGAATAAAATTGGTGGAAAATCCAACACTGGCGAGGGTGGAGAAGCAAAATCTCGCTGGAAATTAGATGCAAACGGTGATGACAGAAAAAGTGCTATCAAACAAGTTGCTAGTGGCAGGTTTGGCGTTAGCATTGACTATCTCAATCAAGCCACAGAAATTCAAATTAAAATATCACAAGGTGCTAAACCCGGCGAAGGCGGAGAATTACCAGGGACGAAAGTTGATGCTATAATTGCCGAAACTCGCAATTCAACCAAGGGTGTTGGCTTGATTAGCCCTCCACCACATCACGATATTTATTCAATTGAGGATTTATCACAACTTATTTTTGACCTCAAACGCAGCAATCCAGCTGCTAGAATTAGCGTTAAACTTGTTGCTGGGACTGGCGTTGGCACAATAGCTGCTGGTGTTGCCAAAGCCAAAGCCGATCATATAGTTATTGCAGGACATGACGGCGGAACTGGTGCATCGCCACTAACATCAATCAAACACGCAGGTTTGCCGTGGGAATTAGGACTAGCAGAAACTCATCAAACCTTGGTGATGAATGATTTACGCAGTCGTGTTATTATTCAAACTGATGGACAACTAAAAACAGGGCGTGATGTTGCTATTGCTACACTTTTGGGCGCTGAAGAATTTGGTTTTTCCACAGCACCATTGATAACTTTGGGTTGTATTATGATGCGTAAATGTCACCTCAATACCTGCCCTGTTGGTATTGCCACTCAAGACAAAGAACTTCGCAAAAAGTTTAGCGGTAAACCAGAATTTGTGATAAATTATTTATTTATGGTGGCAGAAGAATTGCGTGAAATTATGGCAGAATTAGGTTTTAAAACTGTCAATGAAATGGTTGGCAGAGTTGATAAATTAACAATGATTGATAGCAAAAACCACCATAAACAAAAAAACATTGATTTAAGCAATATCTTGCAAATGATTGAAAAACCACATAAATCTGTTGGAACTTACAAACAAAAAGACCAAGACCATCAACTGGAATTACAACTTGACAATTCATTGATTAGTGATTGTAAAAATTTTGAAAATGAGCTAATAAATATTGATGAAAAAATCATCAACACCGATCGCACTGTTGGAGCAATGTTATCATCATTTATAGTCAAAAAAACTGGCAATAACAACTTAAGCAAAGACCAAATAACTGTTAATTTTGTTGGGTTTGCAGGGCAATCTTTTGGGGCATTTTTAGCCAAAGGTATAACATTTAATTTAAGTGGTGATGCTAATGACTATGTTGGAAAAGGCTTATCTGGCGGAATAATTGCCGTTAATCCACCAAAAAACTCAAAGTTCAATGCCAGTGAAAATATCATTGCTGGTAATGTTTGTGGCTATGGTGCTACTGGCGGAGAAATGTATTTATCTGGCGTTGTCGCCGAGAGGTTTTTAGTGCGTAATTCAGGGGCGATAGCAGTTTGTGAGGGTGTAGGAGATCACGCTCTTGAATATATGACTGGTGGAATTGCGGTTATTATTGGTGAAACTGGGCGTAATTTGGGTGCTGGAATGAGTGGCGGTGTTGCATATATTTACAACCCAAATGATACTTTAAAAAACCACATAAATCCAGCAGGATTAGACCTTGATTTGATAGAAAATAGTACTGAATTAAAAACAATTCTACAAACCCACAGCAACAAAACAAATTCCAGCAAAGCTAAAACTATTTTGGATAATTTTGATAATTTTGCCATAGGCAATAGTGCCTATTATCTAGGCGATTATAAAACAGCATTGATGGAGTTTGAAGAATCTGGCAACCTAGGTGATGTTAGGTCGCAATATAGTTTGGCAGTTATGTATGATAGCGGCAAAGGGGTAGCCAGAGACCTAGTGGAAGCAGTTAAATGGTATCAAAAAGCCGCCGAGCAAGGTAGTGTTTTGGCACAATATAATTTAGGATTATCTTACTCTGACGGAGAAGGCGTTTTACAAAATCACGAAACAGCATCTTATTGGTATAAACAAGCCGCCGAGCAAGGTGATGTTTTGGCACAATATAACTTAGGACTTGCTTACACTCGAGGTAATGGCGTTGCTAGAAATTTGAAAATGTCAATTTATTGGTGGGAAAAGTCTGGTAATCAAGGCAATGTTGCAGCACAATATGCCATAGGTTTATTGTATATCGTTGGTCCTGGAGAATTTATAGATATGGTTAAAGCAAAATATTGGATGCAAAAAGCCTATAAAAATAAAGATGAATCAATGTTTGAAGAGGCTTCAAGAATCTGGAAAACCTTTCAAAAAATGGATAAAAAATCTGCAGAAGATAAAAAATAA

Transcript

Acti_006291-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08238 all species →	Sel1	Sel1 repeat	Repeat	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF00310 all species →	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF04898 all species →	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan
PF01493 all species →	GXGXG	GXGXG motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan
IPR036485 all species →	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR002489 all species →	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR006982 all species →	Domain	Glutamate synthase, central-N	Interproscan
IPR050711 all species →	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11938 all species →	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0019676 all species →	Biological Process	ammonia assimilation cycle	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Acti_006291-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.