Gene detail

Detailed information of Acti_008581-T2 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_578:10463388...10502656
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_008581-T2

ATGGCGACTGCACAATATTCCTACATTATCTTAAAGCGAAATTCTTATCAAGGAGCGTCAAGAATAGGCAACATTTCAAGTCTACTTGTCACAACGTTTGTTCCATGTGGGAGCAGAAGTTGTTTACTTTCAAGACTGGGCCGTATATATTTCACTTGCGCAAGTGGCCGGAGACAGTTCTGTAGCTCAACACTCAGTGGAGGTGACCAGAGTGAGAGGAGAGAAACAAAAACAGTGGTGGATCCAAACAGGACATTGAAATCTGAATTGAGCAGTACATGTAGACATAGTGTTACTGTAAAGGAGGATAGCCTTGCTGGACAGAAAGTTAACAAAGCTGATGAGCATACCCGCCTGCTAGATTCAGACAAAATACTGGACCTTCATGATAATAGAAATAATGAGGGAGCATACAGAAGCATGAGCTGTAACAGTACATCTTCACAGGAATCAACTGATGAGGATGATGTGCCCATTGTCCCATATAAACTGTGGAGAGCTGGTGTTGATAGCATCATTGGGCAATTCCAGGCTGAGAAAGGTATTCGCAATGCTGCACAAAATCAAGGTCTAGATGATAATCAGTACCAGAAAACAATCCAGTCATTCAGGAGGGGAATGCTGAAGGCAATGAAGAAGGACTTTGAGCTTCACAGTCTGATGTGTGCAATTGATTCCAAAAAAGCACATCTGCATGATCTGTTTCCATTCTTCCTCAAACTTGCAAATGAGTTGTTTCCCATGCGTGGCTGTGATATGGAGAAACTCAAGAAGATTTCAGACCTCAGGGGGCCTCCTGATTTTTTTCCCAAGGCTCGTAAATTGAAGAGGAGGATAATTTATCATGCTGGCCCAACTAATAGCGGCAAGACACATGCAGCTCTTGAAAGGTTTAGGACTTCTGGTTCAGGGATGTACTGCGCACCTTTACGACTACTGGCAGCAGAGGTGTCCAGAAAGACCAATGAAGCTGGGGTACCCTGCGATCTCCTAACAGGAGAGGAGAGACTGTGGGCAGTGTCAGTGGAAGAACCATCCTCCCACATGGCTTGCACAGTGGAGATGAGTAGCACCAGACATCACTATGAATGTGTTGTGATTGATGAGATTCAGATGATGAGGGACCCTGACAGAGGCTGGGCTTGGACAAGAGCATTACTAGGAGTGCTATGTGACGAGATTCATGTCTGTGGAGAGGATACGGCTGTAGATTTAATAAAGAGCCTGGCTGATGCTTGTGGAGATGAGGTGGAAGTGTGTAGATACGAAAGACTTAGTCCTTTAAAAGTGTTGCCTTACAGTTTAGGTGGCCAGCTACACCTCATCAGGCCAGGTGACTGTGTGGTAGCATTCTCTCAGCGAGAACTGTTTAAGATTCGTCAGCGAATCGAGAGAGCCACTGGAGCCAAGTGCGCTATAGTTTACGGCGGACTTCCACCAGCCACCAGGATTGACCAAGCATCAAGATTCAACGATCCTGGTGACGAGCACAGGATTCTTGTTGCTTCAGATGCTATTGGCATGGGTCTTAACTTGAACATCAAGCGAATTATCTTTTATGCTGTTGAGAAGTTTGACGGCCACTCGTTCTCTAAGCTAACTCCGTCACACGCTAAACAGATCGCCGGGAGAGCAGGGCGGTTTGGATCAGAGCACCCAGAGGGCGAAGTCACCACGTTGTATGGATCTAAGCTGAGTACCCTCAAGAACCTTCTGAAACAACCGTCTAAACCAGTCAAAGCCGCAGGACTGTCGCCTAGCATGGAGCAGATCGAGATGCTCTCCCATCAACTACCAAATGCGACGCTTGCTAACTTACTGGAGGTTTTCCTTGACGTTGTACAGTTGGATGGACAGAACTATTTCATGTGCGATCTCGAAAATGTTCAGTTTATAGCAGAACTGATCGAAGGTATCCCCCTCACTGTCTGGGAGCAGTACTCGATCTGCCAGGCTCCTGTCAGTTCTAAAAGGACCCTGTCATCTACTGCGATTGTTGAGGTAAATGTGATCTGCACGTGA

Transcript

Acti_008581-T2

GATGTAATTGTATTATAACCAAGTCATTTAGCAATATGGCGACTGCACAATATTCCTACATTATCTTAAAGCGAAATTCTTATCAAGGAGCGTCAAGAATAGGCAACATTTCAAGTCTACTTGTCACAACGTTTGTTCCATGTGGGAGCAGAAGTTGTTTACTTTCAAGACTGGGCCGTATATATTTCACTTGCGCAAGTGGCCGGAGACAGTTCTGTAGCTCAACACTCAGTGGAGGTGACCAGAGTGAGAGGAGAGAAACAAAAACAGTGGTGGATCCAAACAGGACATTGAAATCTGAATTGAGCAGTACATGTAGACATAGTGTTACTGTAAAGGAGGATAGCCTTGCTGGACAGAAAGTTAACAAAGCTGATGAGCATACCCGCCTGCTAGATTCAGACAAAATACTGGACCTTCATGATAATAGAAATAATGAGGGAGCATACAGAAGCATGAGCTGTAACAGTACATCTTCACAGGAATCAACTGATGAGGATGATGTGCCCATTGTCCCATATAAACTGTGGAGAGCTGGTGTTGATAGCATCATTGGGCAATTCCAGGCTGAGAAAGGTATTCGCAATGCTGCACAAAATCAAGGTCTAGATGATAATCAGTACCAGAAAACAATCCAGTCATTCAGGAGGGGAATGCTGAAGGCAATGAAGAAGGACTTTGAGCTTCACAGTCTGATGTGTGCAATTGATTCCAAAAAAGCACATCTGCATGATCTGTTTCCATTCTTCCTCAAACTTGCAAATGAGTTGTTTCCCATGCGTGGCTGTGATATGGAGAAACTCAAGAAGATTTCAGACCTCAGGGGGCCTCCTGATTTTTTTCCCAAGGCTCGTAAATTGAAGAGGAGGATAATTTATCATGCTGGCCCAACTAATAGCGGCAAGACACATGCAGCTCTTGAAAGGTTTAGGACTTCTGGTTCAGGGATGTACTGCGCACCTTTACGACTACTGGCAGCAGAGGTGTCCAGAAAGACCAATGAAGCTGGGGTACCCTGCGATCTCCTAACAGGAGAGGAGAGACTGTGGGCAGTGTCAGTGGAAGAACCATCCTCCCACATGGCTTGCACAGTGGAGATGAGTAGCACCAGACATCACTATGAATGTGTTGTGATTGATGAGATTCAGATGATGAGGGACCCTGACAGAGGCTGGGCTTGGACAAGAGCATTACTAGGAGTGCTATGTGACGAGATTCATGTCTGTGGAGAGGATACGGCTGTAGATTTAATAAAGAGCCTGGCTGATGCTTGTGGAGATGAGGTGGAAGTGTGTAGATACGAAAGACTTAGTCCTTTAAAAGTGTTGCCTTACAGTTTAGGTGGCCAGCTACACCTCATCAGGCCAGGTGACTGTGTGGTAGCATTCTCTCAGCGAGAACTGTTTAAGATTCGTCAGCGAATCGAGAGAGCCACTGGAGCCAAGTGCGCTATAGTTTACGGCGGACTTCCACCAGCCACCAGGATTGACCAAGCATCAAGATTCAACGATCCTGGTGACGAGCACAGGATTCTTGTTGCTTCAGATGCTATTGGCATGGGTCTTAACTTGAACATCAAGCGAATTATCTTTTATGCTGTTGAGAAGTTTGACGGCCACTCGTTCTCTAAGCTAACTCCGTCACACGCTAAACAGATCGCCGGGAGAGCAGGGCGGTTTGGATCAGAGCACCCAGAGGGCGAAGTCACCACGTTGTATGGATCTAAGCTGAGTACCCTCAAGAACCTTCTGAAACAACCGTCTAAACCAGTCAAAGCCGCAGGACTGTCGCCTAGCATGGAGCAGATCGAGATGCTCTCCCATCAACTACCAAATGCGACGCTTGCTAACTTACTGGAGGTTTTCCTTGACGTTGTACAGTTGGATGGACAGAACTATTTCATGTGCGATCTCGAAAATGTTCAGTTTATAGCAGAACTGATCGAAGGTATCCCCCTCACTGTCTGGGAGCAGTACTCGATCTGCCAGGCTCCTGTCAGTTCTAAAAGGACCCTGTCATCTACTGCGATTGTTGAGGTAAATGTGATCTGCACGTGATCAGCACGTAATCTGAACGTGAAAAGAACGGCGTCTACAGACTACAGCCTCGCGCACGAACATACATGTCGTACACCTATTTCAAAAAAAGGTCGGTGAATTTGTGAGCAGATTGAAAGGAGCTTGGGTTGAAGGTCAATTTTGTCATCTAATTTAATGGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18114 all species →	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18147 all species →	Suv3_C_1	Suv3 C-terminal domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041453 all species →	Domain	Suv3, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR041082 all species →	Domain	Suv3, C-terminal domain 1	Interproscan
IPR044774 all species →	Domain	Suv3, DEXQ-box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0045025 all species →	Cellular Component	mitochondrial degradosome	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17675	SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3	EC:5.6.2.6	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.