Gene detail

Detailed information of Acti_009671-T2 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_578:41147477...41166032
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_009671-T2

ATGAGTATTCCAAAGGTAGAGGTGATACTTCAAGAAGCGAATGATACACCAGACAGAAAAGTAAGTGCTTCGTATACCCTACTAGAGAACGAAGATCAGGAAGATGAAGATAGTTTATCCGAGAAAGCGGATACCGATGATCAAGATCAAGAACGTTCAGCTAAGATTAACGCCAAAGAGGAATCCTCGAAGCAAACGAATCGAGCTCTTCTCAACTACTTCGCAAAGTTGTCTAGCTCACCTAACGTGAGCGACCCAGTGAACTTCGAGTTCCTTCAGTCTCTTTTGGATAAAGGCGCATCTATTAACACTACCGATAAATACGGACAGACAATATTACACGAAGTAGCGCGCAGCTGGGGAACAGAAACTGCGCGATTTCTTCTTGATAAAGGAGCTAATATCAATTCCGTCGACGCGTACGGCCGCTGTCCTCTTCACGTGGCATGTATCAATGACTACCCAGAGATGGTGCAGTTCTTATTGGATAACGGAGCCGACGTCCACGCTAAGACGACTACAGAGAAACAGACAGGTCTTCACTTCAGTGCTAGGAGTGAGGCAAGTAGTTGTGCAAAGATACTGCTTGCATACGCTGCCGATATTGAACAGAGAGACTACAAGGGCAGGACACCTCTATTGTTGGCAGCAGAGTATAACAGTGCGGCAATGGCTCGCTTTCTTCTAGAGGAAGGCGCCTCTCCAGGAGTACAAGATGGCAGTGGACAGAGCGCTTTGAGTTTCCTTTTTAACAAAATGCCTAATGTGGCTCTAAAGGCCCTGGATTACTTCCACTTCATCGATCGTCCTCGCCGCAAGCAGTTCTTTTACATTAACTTCTTTGACAACACCAGCCTTCATAACGGCAAGAAAACGCATGCGCAGACACCACTAGAGGCCTTGGTTGAAGGCCAGTATTACGAACTTATCATGCATCCTGTATTGCAGAAGATGATTGACGTTAAGTGGAAGCACTTTGGACGAAAACAGGCGTGGCTGGATATAATACCAAATGTGTTCCTCACTGTACTCTACACTACCCTCGCTGTTCTCTACCCAAACGACATTTCAACCTACTACAGCAATATTACGACGACCTGGTGGCGTCCTGTTTTGGAAATATGCGTCATCTTTCTGACTGGCAATGAGATCAGAAAAGAAGTCCTGGAGATTTACACCTCGAGACGGGCTTCAAATGCGTGGAAGTTTTGGCGAAACAAAGAGCTTTTGCGTGATCTTGAGTTCTGCCATCCAAAATATCCCCAAGAGACAAATCACGTTGAACATGAAATTAAGAAGACGAGGCACGTGAAAAAACCGTACTTCCAAGACAAGTGGAATTATTTTGACTGGATCGCTTATGTGATGGTGTTATTTATTTTCTGTATGCACTACACTAATATCTTGGTCAAGAGTAAAGTTTTCAACAACGCATTTATCAGCGTCATGGCCTGTACTGTCATTCTCGTATGGATACGGATGCTCAAGTACGCCCGTCCCTTCCCCACCCAGGGGCCTTTTGTTGTCATGTTGGATCCCATCGCTGTTGATACAATCAAATGGTTCTTCCTATTCATGATGTTCTATATTCCTTACTCTGCAGCCTTTTGGATGATGTTTGGCGGCCGCTCAGAGAAACCCGTCAAAGGATATGAATCATTCTTCAGCCTGGTTTACAGTACTTCACAGATAAGTCTACTTCTAGATTTCGGATTTCCTGACTTGGCGAAACAGTCACCGATAATGTCGCGGATTCTCTGTGGCTCCTATCTCGCGATAAGTGCCGTGCTGCTTATGAACTTGTACATCGCCATGTTATCTAATACTTTTCAGAAGGTTTTTGACAACGCGCAAGCAGTTGGAGCCATGGAGCGCGCTGCGCTGATGCAAAACTTAGAATCGCGTGCATTCAAGAGAGATTTAAGCAAATACCGGTACATTTTACGTTCTGAATGTAGCCCTGTAGAGTGTGATTATCAGAAAATCACGACAGGCGAGGAGGACAGGGAGCAGAGGCAAGACGAGAAGCTCTCTAAGATGTTTAGTATTGTCAATGAGAGATTGGGGGCAAAGAAAGTCGGCGCGACGAAGAAATCAGATTTTGACAACATCGTTGACAATCTGGACTACTTCAGACGAGCGCAAGCTGAAATTCAGTTTTCATTCGGAAGGCTAAGCATAAAAGAGAAAGAACAAAATCAGTTTAACTCTATGGTTATCCAGAATTTATTTGACTTAAAGAGTCTGCAAGAGTCAAATATGCTACTTTTGAATGGAATTAATGAGCGACTGAGTTCGTTAGAAACTGTGATCAAATCTTTGGATGTCTTGACTGTGGAGAGAGGAGAAAGGAAAAAACGGCACAAGGACCGTAAGGATCACGAGGAGGTCGCTACAGAGGATACAACAGGACTAACAGCAGATAATTTAGTAATGACAGCTTGGAAAGTACCGAGTGATGAAGAAGATTTGTAA

Transcript

Acti_009671-T2

GAAAGACCCAATACTAGCACTCTATCACTTGCAAGCGTAAATTCAAGTCCCAGCCCTATCGTGGCAGTAAGGCGACAGGCTATGAGTATTCCAAAGGTAGAGGTGATACTTCAAGAAGCGAATGATACACCAGACAGAAAAGTAAGTGCTTCGTATACCCTACTAGAGAACGAAGATCAGGAAGATGAAGATAGTTTATCCGAGAAAGCGGATACCGATGATCAAGATCAAGAACGTTCAGCTAAGATTAACGCCAAAGAGGAATCCTCGAAGCAAACGAATCGAGCTCTTCTCAACTACTTCGCAAAGTTGTCTAGCTCACCTAACGTGAGCGACCCAGTGAACTTCGAGTTCCTTCAGTCTCTTTTGGATAAAGGCGCATCTATTAACACTACCGATAAATACGGACAGACAATATTACACGAAGTAGCGCGCAGCTGGGGAACAGAAACTGCGCGATTTCTTCTTGATAAAGGAGCTAATATCAATTCCGTCGACGCGTACGGCCGCTGTCCTCTTCACGTGGCATGTATCAATGACTACCCAGAGATGGTGCAGTTCTTATTGGATAACGGAGCCGACGTCCACGCTAAGACGACTACAGAGAAACAGACAGGTCTTCACTTCAGTGCTAGGAGTGAGGCAAGTAGTTGTGCAAAGATACTGCTTGCATACGCTGCCGATATTGAACAGAGAGACTACAAGGGCAGGACACCTCTATTGTTGGCAGCAGAGTATAACAGTGCGGCAATGGCTCGCTTTCTTCTAGAGGAAGGCGCCTCTCCAGGAGTACAAGATGGCAGTGGACAGAGCGCTTTGAGTTTCCTTTTTAACAAAATGCCTAATGTGGCTCTAAAGGCCCTGGATTACTTCCACTTCATCGATCGTCCTCGCCGCAAGCAGTTCTTTTACATTAACTTCTTTGACAACACCAGCCTTCATAACGGCAAGAAAACGCATGCGCAGACACCACTAGAGGCCTTGGTTGAAGGCCAGTATTACGAACTTATCATGCATCCTGTATTGCAGAAGATGATTGACGTTAAGTGGAAGCACTTTGGACGAAAACAGGCGTGGCTGGATATAATACCAAATGTGTTCCTCACTGTACTCTACACTACCCTCGCTGTTCTCTACCCAAACGACATTTCAACCTACTACAGCAATATTACGACGACCTGGTGGCGTCCTGTTTTGGAAATATGCGTCATCTTTCTGACTGGCAATGAGATCAGAAAAGAAGTCCTGGAGATTTACACCTCGAGACGGGCTTCAAATGCGTGGAAGTTTTGGCGAAACAAAGAGCTTTTGCGTGATCTTGAGTTCTGCCATCCAAAATATCCCCAAGAGACAAATCACGTTGAACATGAAATTAAGAAGACGAGGCACGTGAAAAAACCGTACTTCCAAGACAAGTGGAATTATTTTGACTGGATCGCTTATGTGATGGTGTTATTTATTTTCTGTATGCACTACACTAATATCTTGGTCAAGAGTAAAGTTTTCAACAACGCATTTATCAGCGTCATGGCCTGTACTGTCATTCTCGTATGGATACGGATGCTCAAGTACGCCCGTCCCTTCCCCACCCAGGGGCCTTTTGTTGTCATGTTGGATCCCATCGCTGTTGATACAATCAAATGGTTCTTCCTATTCATGATGTTCTATATTCCTTACTCTGCAGCCTTTTGGATGATGTTTGGCGGCCGCTCAGAGAAACCCGTCAAAGGATATGAATCATTCTTCAGCCTGGTTTACAGTACTTCACAGATAAGTCTACTTCTAGATTTCGGATTTCCTGACTTGGCGAAACAGTCACCGATAATGTCGCGGATTCTCTGTGGCTCCTATCTCGCGATAAGTGCCGTGCTGCTTATGAACTTGTACATCGCCATGTTATCTAATACTTTTCAGAAGGTTTTTGACAACGCGCAAGCAGTTGGAGCCATGGAGCGCGCTGCGCTGATGCAAAACTTAGAATCGCGTGCATTCAAGAGAGATTTAAGCAAATACCGGTACATTTTACGTTCTGAATGTAGCCCTGTAGAGTGTGATTATCAGAAAATCACGACAGGCGAGGAGGACAGGGAGCAGAGGCAAGACGAGAAGCTCTCTAAGATGTTTAGTATTGTCAATGAGAGATTGGGGGCAAAGAAAGTCGGCGCGACGAAGAAATCAGATTTTGACAACATCGTTGACAATCTGGACTACTTCAGACGAGCGCAAGCTGAAATTCAGTTTTCATTCGGAAGGCTAAGCATAAAAGAGAAAGAACAAAATCAGTTTAACTCTATGGTTATCCAGAATTTATTTGACTTAAAGAGTCTGCAAGAGTCAAATATGCTACTTTTGAATGGAATTAATGAGCGACTGAGTTCGTTAGAAACTGTGATCAAATCTTTGGATGTCTTGACTGTGGAGAGAGGAGAAAGGAAAAAACGGCACAAGGACCGTAAGGATCACGAGGAGGTCGCTACAGAGGATACAACAGGACTAACAGCAGATAATTTAGTAATGACAGCTTGGAAAGTACCGAGTGATGAAGAAGATTTGTAAAGCGCTTGGGTTTTACAGTTTTATTTTTGCAGAAAAACGAGTTCTAAACCGGCCACACGTTTAAGGTCAACGACTGAATTCAGGGAACCGCGCGAAATGAGTAAAATTGCAAAGATCCATTATCGTATCTAAGAACTTTTCAAAATATTTCATTCCCTTTTACCCTTCATCGACATCTTTGGTGTATAATGCTCCAGGTATCCAGGCTACGGTGTTGTTGTTGTTTTGTAACCTTTAGTGAGTGACCAAAAGTTATGCTTATGCCAGTGTTGATGTTTGGGAATCTGATCACGGGTGTTACGTTTTGTCACAAGTGTAGTACACTGGCTTCAAGATCTAAACCTTTTTTATTGTGCCAGTTTCATTGCAACATGTATGGCTTGACCTTTTCTTTGGTCAAACGATGTACAAATAATGAAATATTTGCGAAAATTACAAAATATGTCTAGAAATGATTAATGCAAGATTTACCTAAAAAACTATTAAGAAGTGTTAGTATAGTATCAAAAATACTAATTTGATTATATTGAGTTCTTCACTTGACTAGTTGAGTTGTAAAGTGTATAATTATAAGCAATAAATTGATGTAAAATTATACGTAACTCGCTCCGGTTGGAAAAAATAACATCCCCGATCACAGTACCGCACAAACTGTCTGCGCTTGGACTATTTCAATAACTTTAACATGGTTCATTGATGCATCGATATTTAATAGACCAATTAAATTTATTTAATTCAACATGATCTTATAATCATTCTCAGTCCTAACATTCAAAGTATCCAGTGTATTAGGCCAGCCTATGTTCAACCAGGAGAGCATAAAGGTACAGACACACGCTGCAGCATTGCGCGTAACATTGCCGGCAATGTTTCAGAAGTAGGATCGAGTTCTATTTCAGCAACATTGCGCGCAACAAATTGCAACAATTGCTGGCAACATTGCGCGTAAAAAAATACACCGTGTGAACAACAATTGCTGGCAATATTGCGCGCAATGTGGCAGCGTGTGTCCGTACCTTAAGTGAGAGGGAATCTCCGATACGCGAGCTTGTGCGATGATAATGTCTAATAAAATCTATTTTTATTAACCGGAAGCAGCTGAGAAGTGCTCGAATGGCGACAGCGCTGCATAACAATCTCGTACCCAGACCGCCCCATTTACTGAATAAAGTGACGCGCGTAGACTAGGGACGACTGCAACGTATACAAAAATGGCGGAAATTTCAAAATTTAGCGAGTACCTTCATGCTTTCTGTGAATAATTACAGTTTTGCTGGAAAGATAAGATTCAAATACTCAGACCACTTCCTCCAGAAACTGAGAAACAACATATGTTTTGAACAATGTAGTTTAAGTTTGGCCACTGGGATAAAATTGCCTTCAAACACGAAAGATTTACCGCCAACAGAAAGTGTTTTCAGAAAAATTCCCCCAATTTAAGCATCAGCTCGCGCATGCGCTCTAGTTATTCAGCCCTGTCCATGGCGGCAAAATATTTTCGCGCCATGAAATCATTGTTTACGCGCGCCCGCGCACTTTGATTCAACTGCTTCCGGTTGCTAAAAATAGATATATATCATCGCACACCGTACGTGCGCTACAAGATTCCCTCCCTTACCTATGCTCTCTTGGTTCAACACGATATCCGAAATCAGGGGCGTAAAAATAAAGATTTTAGCATGTTTACAATATGCAAAAGACAAGAATAGAGAATTAAAGAGAAACACACCCCTGAAATAGTTAGAAGTTAAACAAGTTTTTTTTTTAAGCATGACCTAAAAGTGCAGGAGAAGGCATTTGCGTGCGAGAGTCTAATCCTAAGCATTTTCCGGCCGAGGAAGCGTGCCCCCGGACCACTTTGGAGCGGCACATCCGGACTGATTGTGTGGGCATATACAACTTTATTACAACCTGGCTACGTCCGTTGAAGTGATTTCAGAAATACATTCACAGCTAAAGTTTGAACTGAGAAAATATACTATTAATACTAAGCTCGCAAAATTATATGATACATCGTTTATCATAAAATCAGTTATAAAGTTTCCAAGTTCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR024862 all species →	Family	Transient receptor potential cation channel subfamily V	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10582 all species →	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0098703 all species →	Biological Process	calcium ion import across plasma membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Acti_009671-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.