Gene detail

Detailed information of Acti_010318-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_578:57942539...57994690
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Acti_010318-T1

ATCCAAAATGGCGTCGAGTCCCAGTCCGAGAAATTCTCCGGCTAGTCCAACTCCTGCTTCCCCCGGAGGAACCCTTAAGAGAGATAACTCAAAGAAAGATGCTGGAGTATTCGGATGGATGGGGACTCTATCTAGACGAAAAAAGGGCGAAACTGAAGTTGATCAACTGGAGACAGAAGGAAAGTATGCCATTGAGTCACCCACTACACCCATACACATGATACCACCGGACACCTATGACATGACTGAAAATGAAGAGCGATACATGATAGAGCCGAGATCCCTTGAAGATCCTAATGTCATGAAACTCAAACTGGTTCTTTTAGAATGGATAAATGAAGTTCTTGCAGAAAAGAGGATAGTGGTGAGGGACATAGAAGAAGATCTGTACGATGGACTAATATTGGCTCACCTCATGGAAAAATTAGCAGACATCATTCTTCAGGAGTTTCAGGAAGTTACACAGACTGTGGAAAGCCAGAAAGCCAAGCTTTCTGTCCTACTTGATGAGATCAACAAAGTTCTGAGGATACCGAGACACAGGGCCAAGTGGACAACAGAAAGAGTGCACTCTAAAGACACTGTAGCCATTCTGCATCTTCTGGTTGCCCTCGCGCAGCACTTCAACTGTCAAAAGAAACTAACTCCCAGTGTGAAGATACATACAGTCCATGTGCAGAAAAAAGGAGGTTTGCTTGTTCCTCAGATGGTCACTGAAGAAATCACAGGACCTGACAAAGACATGATGGATGGCAAACATGAGCGAGATGCCTTTGATGCCTTGTTTGATAATGCTCCAGAAAAACTGAGTGTGGTAAAGAAGTCTCTGCAGGGCTTCGTGAACAGACACCTGAACAAGCTGAACCTGGAGGTCACTAATATTGACACACAGTTCCACGATGGAGTATTTTTCATATTTCTTCTTGGCTTGTTAGAAGGATTCTTTGTACCTCTTTATCAGTTCCACGTTACGCCTATTAACGAAGACCAGAAGCGTCAAAATGTGGACCTTGCTCTGGACCTCATGCGAGACAGTGGACTGAAGTTCTACGCTAAGACAGACGACATCATGAAGCGAGACCTCAAGTCAACACTCAGGATCGTGTACAGCTTATTCCAAAAGTACAAACACCTTAAATAGAAAATACTTTCTTGATAAACATGATATTGAGTTAATGAAGTATATTTTGTAATGAGGAATGGAGTGAGAACCCTCTTGTGTTGAATAATAGTCCTTTTGAAAGGTCCATAACTGAATAATGTGACAGATTCGAGAAGAATCAAGGCGACTAAGCCTTTTTATTCAAGTGCCCGGCGGCATTTACTACATGGTTCGTGCAGTCTTGAAGAAATCGTTGAATTTGATCTGGAATTCAAAAGTGTCCTCGGAAAGTACTTGAAAAGTCCTTGAGTTTCTCTGTAAGCACATTATTCAAAGTATAATTAGGAAAACTATTTGTCAAAAGAATTCAGTTAAGTAGTCCACAATGGTAATCAGTGGCGTCTTGCAGCGTCCCTGTGATTATTAGTACTTGAAAAGTCCTCGAATTCTGGCTGGGCGTGAAAGCTGTAGAAGCCATATATTAGATCTCGCCTTTCAACTGTTTAAGGTACAAGATTTAAAATGTACTTAAGGGGGAGGGGTATGTATGCGTTTTAGTATCACCTCGGCGTAATCCCAATATGAGATATTGGTAACGAGGGAAAAAAGATACTGTTTTAGTGTCTGTAAAAACTAAAACTGCGGCCAACTGTATCTAGTAGTTCGAGGATGCAATAGTCAAGTTTTCAGGTTCGGCCACAGGGTGAAACATTGCTAGCAATATTACTTGCAACAATTCCCCCCAGTATCCTTTTTCGAATCTTTTCTTATTCACAATTTTTAACTCTCCTGAGAATACCGAGACGATGGTCCAGATTAGAAGAACAAAAGAATCAGCGCAAAGGATTCTGGTAGTTGTATTCAACTGACGTCATAGCGCAAACCGCCTGTAGACCATTTTGACGATGTTGTGCGCGCAGCTAGAACAATGGCTATCTGTTTTAAATAACAAAAGGCTGTTGAACCAGAACGAGTCTTAGCAGCTCGCTTCTATTGTTCTACTGATGCGTGCGCAACATCGTCAAAATGGTCTTTTGCAAAGGTTGACGCATGGAGAAATGTAGACTGCCGGCAATATTGCGCGCATGTCAAATCATGGCCACAATATATAGCGTAAGCCTCCGTAGCCAACGCATTCTCCCCGTTGAATTAACAACTATCCTTAAATGGAAAACACGCTTGAAATAATGACAATCGTTAATTCTAATAACATTCTTAAAACTAGCCAAGGATAAAGATAAACATTTGCCACTTTCCGAACGGTGGTAGACCGGCTTAGTGTAGTAGTCATGTCGTCTGCACTACACTGCAGTACACGCAACGGGTTACGCGTTCGAGCCGAGTAGGAGCGCTCAAAAACATTCAATTGTTCTTCTCTCGTTTACCTTCTTTTCTTGTTTACCAGTAAAGCCTAGCTCTAGGTGAGTGAGACTAGCCTACGTGTATCCGTTTACCCACCCTCGGTAAGAGGGAACGTCGTTCCCTCCCGACTGAGGATGGGTAAACGGCTACACGTAGGCTGAGTGAGAACCCGTCGTTTACCCGCGAACTCGTCCGATGATTAGGGTTAGGATTCGTCTTAGAATTAATAGTTATTTCAAGCGTGTTTCCATTTAAGGATAGTTGTTAATTCAACGGGGAGAATCGGCGTTGCCGTGGGAAGCGCAGGGGGAGTGGAAATGAGGGGAGGGGGAATGGGGAGAGAGGAAGGGGAGGGGGAGAGGGAGAGGAGAGGAATGGGGAGAGAGGAAGAGGAGGGGAAGAAAGGGTAAGCGCTCCCTTCCTTTATGCCGGAATTTGTGGTTATGAGAGAACTGCCCTCCCTCCTCCTGCGCTTGTCACGCAGGCTACAATAGCGTAGCCTGAATTTCAGCCGTCTCCTCTGGTCCGTTCCTCCCGAGAGAGACGTCTGAATCCAATAGCCGATAATGCCGTCCAGTGACGTCTAGGCGGATTAACAATTTAATGTATGCAAATATGATAAAACTGTCACGGCGGTAGTAAGAGTTCGTGAGAAATATTTATTTGAGATTATGCCGACCAAAATAAAAGCCTCACCTATATTATATATCTCCATCCCATTTGCTTCTCAAGTGCCTCTTATGTTGTGAAAGCCTTTCCGAAGCAACAAATCGTTATATTATATTTGGAGGCAAAGTACAGTTGATATTTGTCTTTCCGTTGATCTTTGTACATGTCTCGCGATCTGCCGTTCGAATCGACACAGCTACAAATGTACCAGATATTACCTATGTAAACGATGCAACAGAAAAGTAGAAAAACATGAAAGGGTAATGGCTAATTTTCGAAGAAATACGAAGACTCTTTTATGGGAAAGAACAGTTCCTTGAAGAGAGTAGCGACATTCTTTACCACTGCGAGTGCGAACAAATAATCGATTGTCAACAACCCCGCGGACGCGACGCGATAAAATGTAGATGTTTACAGGTTTACAGGCCGGTTATTGTGCAGGACACTTTCAATCCATTTCCAGATGTTTTCCTTACGAATTCAAGGTCTTTGCCAAAGACAATCACTCCACTGAAACTCAACGATCAACAATCGCGAGTCCAAAGTGAATCCTGCCGTCTTCTCGGCTGATAATTATGATAATTATGCGAAATTATAGAATATGAACCAATCAAAAATCACTACCAGGTTTTCTGGTAGTGACGTCACTGGACGACATTATCGGCTATTGGATTCAGACGTCTCTCTCGGGAGGAACGAACCCAGAGGAGACGGCTTAAATTCAGGCTAACAATAGCGTGGATATAATAAGTGGAAATTTGCTATTTCTCAAATCTGGAAAATACCTGTCTTACATGTACGTTGAGTTTTATTTGTATAGAATGTAGGTACAAATGTGTAACTTTATTTTTGGATATATAGAAAAAGCTATGATTTAATAAAATAACCAGTTTTCAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR028433 all species →	Family	Parvin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12114 all species →	PARVIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0007163 all species →	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030031 all species →	Biological Process	cell projection assembly	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031532 all species →	Biological Process	obsolete actin cytoskeleton reorganization	Interproscan
GO:0034446 all species →	Biological Process	substrate adhesion-dependent cell spreading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06275	PARV; parvin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.