Gene detail

Detailed information of Acti_022328-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_938:62436112...62484443
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_022328-T1

Transcript

Acti_022328-T1

ATGTCTTTTCAAAGGCCTATAAAGTCAAAACGTGTTTTACCAAACGTTCCTCTAGCTCTGGAAAGAATTGAAAGGGCGTCCTCCAAAGCTAGTAGTAGTAGTTTACCGAGGGCCTTTATTGCTATTTCAACTTCAAGTGGTTCAAAAACTTCAACCGTTTCTTCAAAGGAATCTTCTTCTGCTCCTTCGACTCCAGAGAAGATTCTCATACAAAAGAAGAGCGCTCCTGCTGGGGCCTTGCAGCTCAATGCTTTGAAGAATTCAACACTTGCTGCGGCTCGAAGACGCCTTCTGGAAGAACAGAGCGATTCGAATTCCAGCAGTACCTCCAGTTCTCCGTACAACTCGCCACTCCGAAGAGGTTCAATCAAAGAAAATGTGCCTTTGACTCAGGATTCAATAGGAGAAAATATCAAGGAGCAACATGGTACGAAGGATAGACAAATAGCTCGCGTATTACCTATGTCGCCGGCTTTCTTAGAGGGAAGTTACCCGAGTTCTACGACACCCTATCAAAAGGACATGAAGGAAATTGGAGAGCACTTGGGGAAAAGAGATCACACTTATCTCATTGATGATTACAACACCTCTAAACATGCTAAAGCTGTAACTGAGGAACAGTTTGGTACTCCGCGATCATTGAATGTGAACTCGAACTCGGTACCTATGTCTACGAGTCCTGGTTCGACGCCGTATCAAATGCCGAACATGGACGAAGGCAGTTGTAGTATTACAGTCGCCGTTCGCGTAAGACCTCTACTAGCAAGAGAAAAGGATGACCCAAATGTGAAAATCTGTTTGTCCATGAAGGAAAATGAAACAAGCATTATATCAGAACAGGGAATTAAGTATGACTTTGTGTATGACCATTCACTGTGGTCGGCAGATCCATGCCATCCCAAGTATGTAGGCCAGGAGAAACTTTACAAGCTAATGGGGGAACCCCTCCTAACCAGTGCATTCCAGGGGTACAACACTTGTTTATTTGCCTATGGACAGACTGGATCTGGCAAATCATACAGCATAATGGGCCAAGGAGAGGAGCTAGGTGTCCTTCCTAGATTTTGTGAGGAGCTGTTTGATAGAATCAATATCTGGCCAGAGGTCAGTTTCACTGTGGAAATCAGCTATTTTGAAATCTATAATGAGAAGATTCACGACCTCTTGGTGTCCAACAAAGGGAAGCATAAAGATTATAAGAAACAGTTACGAGTCAGAGAGCATCCAATTTTAGGCCCATTTGTGCAGGACCTTTCAACATATGTTGTCAGTTGCTATGCAGACATTGAGTCTTGGCTTGCACTTGGAAACAGAAACAGAGCCACAGCAGCAACTGGCATGAATGATAAAAGTAGTCGCTCCCACTCTGTATTCACTATCGTCATGTCACAAACAAAGACAGAGGTATTTGAAGGCACAGAGGCACAGATGACTAAAACCAGCAAAATCAACCTGATAGATTTGGCAGGTAGTGAGAGAGCCAGCAATGTTCTCAGTGACCAGGTTATCAACTCTGCTGAAACTGCCTCACTAAGACTCAAGGAGGGTGGTAGTATCAACAAATCTCTACACACTCTTGGTAAAGTCATTTCCCTGCTGTCAGACAAGGAACTTCAAAAGAAGAAGAAAATGTACATCCCTTACAGAGATTCCTTTCTCACTTGGCTTTTGAAGGACAGTCTTGGTGGAAACTCCAAAACCGCCATGATAGCCAATGTCAGCCCTGCTAACTCGCACTTTGGAGAAACATTGAAACTTCGCGCAGAGATCGAACGTCTTAACAGTGGCGGAAAGGTGAACGAGGAGAACAGTGTTGCATTGGAAGAGGTCTCTCTGTTAAGAGGAAAATTACTAGAGACACAACGATTACTGGTGGAGTCAACAAGAAACTGGCAGGAAAAGTTAGCTCTGTCCGAAAAAAGAAAATTAGAGGAAGCGGAAAATCTGAAGAAAGCAGGCATTTCTTTCAAAGTAGACAACAAACTTCCGAATCTCGTGAATCTCAACGAAGATCCCCAGCTCTCAGAAATGTTATTATACATACTAAAGCCAGGTGCAACCACTGTTGGACACCAGCAGGAGGAGGACATTCAACTGAGTGGCGCCCTCGTAGCTGAGTCACACTGCATTATCAAGAACGAAGGAGAAAAAGTCACCGTATCACCTCTAGGAGACGCTCCAACTTACGTTAATGGACAACTCATTTGTGAGGAGGCAGACTTGCATCACGGTGATCGTATCGTGATTGGTGGTGATCATTTCTTTAGATTAAATCACCCAATAGAGGCGAAGAAGCGCAGGGAGCAGGTCCGTCATGGTGAAGTGGTGGAGGGATCAACTCCTGATGTGGCAGTTGTCAAGGACTTCGAGTATGCAAGGAACGAGTTGGCACAAGTTCAGAATACACGGCTTCAAGCTGAATTAGAGGAAGCGAGAGAGGAAGCAAGGATCCAAGCACAAGAGGAGATCATGAAGCAGATACAAAAAGAGAAGGAAGCTGCCAACAAGACGCTCATGAAGCAGAAGTTCCAGTACGAACAAAAAACCGAAGAACTACAAAGTGCTCTGAATGAGCTGAATGTGAAAAAGGAAGAAGCAGAGAAATCGAGCCAATCAGCGGCAGATGTCATCTCAGAGCTCCAAGCCCACAGACAGGTTTTGGAGCAGGAAATTTTGAGTAACAGAAAGAAACTACAAATGGAGGCACTTGCAGCTAAGCAGGCTCTTGAGGAAACGAAACTGAACCAAATCAGGATCATGTCAGAGCTGGAAAAGGAAAAGAAGAAAATGCAAGAAGACGTGGAGAAACTAAAGGAAGCCAAGAAACACCGCGAGAAGATGAGAGAGGAATTCAGAGCGTCGTTTTCGGCACTCGGACGAAAGGCTTCTAATATGGATGATCCTAGCAAGAAAGAGTTACTACGGACCACGATGGCTCTGAGAGAGGCCAACAAGATCAGCCAGCATTTGAAGAAGAACATTACGTTCAGTCGGGATGAGGTTGACGTTAACGGAAAGACCGAGACCAAAATAAGACTGAACGACACAAAGAAGGGACTGACTACGCTGTGGTCGTTAGGCAAGTTTGAGGCCAGACTACAGCTAATGAGGGATTGCTATCAGCAGGAAGAGAACGAAGGTCATTCAGGTGATGACGATCCATTCATGGACCCTGATGACAAGTGGAACACGGATTTCACGATGGAGTCACCTAACAACAGACGTATGTCTACTCTGGGTGCTTTGTCGCTTAGCACAAGAAGGACAACCTCATCAACAGCAACAGGCAAAAACCAAGCTCGAGCAGAGAACATCTTTGCGAAGTATCACAACAAACAAGAACCTCGTTCAACTAGTTCAGACGTGTCTGCCACTAGCTCGCCCAACACCACCCCTACTGGGTCAGCTTGTGTGTCGCCAGCCTACCCCTCTTCACCAGCACTACGTAGAAAATCAATACAGTCGAGTGCATCTTCGGCACCACTAGTTAAACCAGGCCGCCAGCCTGTGTCTAGTTTGTGTGCCGTAATTCTTGGAAAATCGCTGGAATTGCTTAAAGAAAACTCGAATCCCTTTAGCGATCCAGTTTACGAGAGAATACTGACCAGTGCCCAGAGATTGAAGGCAGCCGTCTCTACTGTCAAGAGTCACTACAAGGATATCTTGGAGAGAGGTTGTGGCGCTACCAAGGAAGTTCAAGAATGTTGCATTTCTGCTACCGTTGTCATGGAGACGCTGATAGCACAGGTCCAACTATGGCATTGTCGAATCGAAGGAACGAAGCAAGAGATGTTTGCTTCCCTTCGCGACGAACTCATGGAAATTGTCAAAACCCTCGCAGCAGAACTCGTGAAAATTCTCTCGAGTTTAGACGATGCCTCTGATCCAAGACCGCACACTGACGAGTTATTCAAGACATGCGAGACAGGGATTAGAGATGTTGTCAAGCAAACTGCGAAGATTGCTGTGTTAAACATGAATGATAATGAGGACATTAGCAAGATCAGCTGCAACCGTGACGAAGACCTGGACCACGCCTTTATAGTGGGCCAGGAGCAGTCTCTACAGACATCCATTCGTCGGTCTATCGACTCGTTAGACAGTCTGCAGGCACAAGTCGAGAATGACGTCATGAGGTCGGACTTGAATGAGGTTGAGAAAGAGATAACTGAGGAAGTTTTAAAGCTGTTGAGGTCCACGTCAGACTTCGTATTTCAAGGACGTGACTTGCAGACTCGACTACAGTCAGCATCGAAGAATCTCCAACAAGACAGAAGAGGTAGTGGTCGTCTAACTTACATAGCACGACTAGTACGAGGTCTCGATACCGTGCTGGACATCAGCAGGACTCTAGCAACAACCACTCCACAGGCATGCGAAAACATGCAGCTTGATACCTTACTTAAATACACCGAGCAGATATCGACTACTGCCAAAGCGGTCACGAAGGACTGCCGAGCACTTATCGAGTCGGAGTACTGTAATATCGGGAATGACGTCGAATCAGATATTTTGGTAGAACAGGAGTATTTTGAGAAGAAAGCCGAAGATGTTGAGGTAACCGGGTCGAATTTAAAAAGGACGTTAAAGCGTTTCATGTTCTTGAATACCGATTCCTCTAGATCTAGAAAGGAACAATTCGAGGTCTGTGGAACACCGTATTCATCAAGGACTCGAGGTCTGTTGACTGACGAGGAGAAACTTGCTCTCCGAAAACGTTGGAATCAAGAGTCTCCTATTTAAAATTTAATGTCAATAAACCCCATCAGTCTAGCAGACTGTTATCCCAGGAGGCCACGGTGCACTCAGATGTGCCGGTCAGCGGTAGGAATCGAACTCGGGAGCGCATGCTCAGTGTGTCGTGCACTGACCCGTTGCGCCACACACACGCACTTAAACATTCTTTGTAGTATAACAGTTTTAGTTGAACGTGTATTGATTTTCGAGTCCTGTTAGCAGACGAGGAGAAATAAGATTTCTGAAAACATTAATACTGCAACATCTCCCGATTTAAGAAATGGTGTACAAGTTCTCGGTTCAGCATAAACAATTTTAATAAGTAGGCTAATGACATTGCAACTGAATATCGAGTTTATAACACTACCATGAAGTATATACCGAGTTTATAACTACTTATGCACCACCGTTTTCACTGCTACGCGATGGCGCGAGATCAAGTCGCGACGTGTATTAGATTTCCGTCAATCAAACGAAGTGGGAGGGGCAAGCCCCAAACGGCAATGCGCGGTCAGACGCATTTTGACCGTTGTGTGAAAATCGACACAACTTGAAAACTCAAGGTTTTACGTTAGAAAGTATCAAATCAGTCTGTTTTTCGTTCGGTCTCAACGGAACTCTGTGCTTATCATAGTTTGTAGAAAACCTGATTGAGTAAAGCATTAAACGTCGAATAATAAAAGAAGCAATAGACACAGGATTTAACGAGAGAATACTTTTTTCCCTTCCCGCCGTCACAGTTAATATTCAAGGTCAGGGAAATTCCAAATTTCAATGAAAAGTCAGGGAATTTTTATTTTCTGGCTGCACAGACCTATTTTGGGGGCTATTTTGTTCAATGTTGCTGTCCCAAAATAGCGATTGAATATTTGGAAAAATACGAGCGTGCGTTGGGAGGTCAGTAAAAAAATGCTTCTCTGTCAGTGAAATGTCAGAAATGTTTTTAATGCAAATGTTGGCTAGCCTGCTATGCAGCCGTATTTTTTTACTCATAAATTCGAAGAAGAAGGTAACGTCTGCTTACCCGAGCGCTTAATTAGTTTCCAATATGCAAGCATGGCGTCAGCACGTTTGTTTTATTTTTCCGCCCAATCAAAGCCATTGTTAGAATTTTAGTGAATTGGCGAGCCAGTGATAACTCTCCTATGATTGGTCAATGGCAAATGTATTGTCTGAATCTTTTAAATGTAACATACGTCCTTTCCAGGATATGAAAGGTAAAATCTGATTGGTCCATAATACAATGAGGTGTGCATATTGGAAACTAATTAAGCGCTCGGGTAAGCAGATGTTACTTTTTTCTTCGAATTTATGAAAGAAAAAATAGGCCATCCCTTCATGTAGGACGACACGAATTGCTACCAAATTGTATTCTATTGTATTGTATTATGTTGCGTTCTATTGTTGTATTGAATTATATTGTGTTGTATTCTATTGTATTTTTGGTAAAAATTCGTGTCGTCCTACATAAAGGGATTGCCAAAAAATAAGTCTGCATAAGCAGGCTAATGTGTGGCAACCCTGATCTAGGTCGAGGAGTTGTTTTCCTGTATCGCGCAACACCACGCGCTCGCGTAATTTTCTTCGGGATTTAGTCGACTGCGGTGTAAAGCCCCACTTCAAAAAAGGTTTCTTGTAAAGCTTTTACACTCGTAAAACACCAAGCGACTCTGAGCCAACGATGATTTAAAATGGTATATTAAAGTCTAGATAGTCGTAATAGATAGTTGTATATAGCAAACTTATTGCTGTACAGAGAAAAAAATGTACGTTAAAGTATATATATATATATTTAGTCAACACTAAGATATAAGACCTGTGTATTTATAGTTTGCCTTCAGGACTACCCGATGTGAGATCCTTCCAATGCCTAAAACTGGTTTCTTAAGTTAAGTTTGGTTGTAGCGTGTGCGGTTTCCTGTGTTGTGAACCGGTAGTTGCATCAGGTAGCGAAAACGAAGTCTTTAGGTTTGTGGGGTCTGGTTTGTGACTGAAACCCGTGGTGTCATTAAATAATTTTCACAATTTCAATACAATAAACACAATTTGTAGCCATGCTTTATCATGGATTGCTTTGTCGTACTCTGCTGGCATCTCCTTTAGGTGTTTTTCCCGGTAAGTTTAATTGGTGGGTTACCTGTGGTATTGGGAGTTTTCCTTGCCGCACGCACCAAACCATAGTTAATACTTAGTACATATGAGCCTGTTATCTTTGATATCGATTGTACATGAAGTGAATAGTCCAACGGTAGAATATTTCTTGATTTGGGG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003901 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16183 all species →	Kinesin_assoc	Kinesin-associated	Family	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF12423 all species →	KIF1B	Kinesin protein 1B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR032405 all species →	Domain	Kinesin-associated	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR022140 all species →	Domain	Kinesin-like KIF1-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47117 all species →	STAR-RELATED LIPID TRANSFER PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17915	KIF14; kinesin family member 14	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinernus sp. WN-2022 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinernus sp. WN-2022, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →