Gene detail

Detailed information of Acti_028078-T2 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_1370:50613487...50638667
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Acti_028078-T2

CCCAGATCGATCGAACAGAAACGAGAGAAATGATGGCAGGACCACAGGCAGATATCGCTTTGATTGGCCTTGCAGTGATGGGTCAAAACATTGTCCTAAATATGAACGACCATGGCTATGTGGTCTGTGCTTTCAACAGGACAGTCGAGAAGGTGGACAGGTTCCTTGCAAATGAGGCAAAAGGAACCAAAGTTATAGGAGCCCATTCATTGGAGGAAATGGTGTCAAAATTAAAGAAACCCAGGAGAGTCATGTTACTGGTCAAAGCCGGAAGCGCTGTTGATGCATTCATTGAGAAACTGGTACCATTATTAGAAGCAGGCGACATCATAATTGATGGCGGAAACTCCGAATACAAGGATTCCATTAGACGCTGTAAATCCTTAGAGGAGCGTGGTCTGCTTTTTGTTGGTAGCGGAGTCAGTGGAGGAGAGGAGGGTGCTCGATATGGCCCGTCGCTCATGCCAGGAGGCTCCTTGAAAGCCTGGCCTCATGTTAAGCCCATCTTCCAGTCTATTGCTGCCAAGGTGGGCTCTGATCCTTGTTGTGATTGGGTTGGTGGTGATGGTGCAGGTCACTTCGTTAAGATGGTTCATAATGGGATAGAATATGGTGATATGCAGCTGTGTTGTGAGGCCTATCATCTTATGAAGGATGCATTGGGAATGACAGCAGATGAAATGAGTGAAGTTTTTACTGAATGGAACAAAGGAGAGCTGGACTCATTTTTGATTGAAATTACAAAGAATATTCTGGCCTACAAGGACACCGATGGCACCACCCTGGTAGAGAAGATTAGGGATGCTGCTGGTCAGAAAGGAACAGGGAAATGGACAGCTATCTCTGCTTTGGAGTATGGTGTACCTGTTACTCTGATTGGTGAATCAGTTTTTGCCAGATGCCTGTCTGCACTTCAGGCTGAGAGAGTTGATGCAAGCACCCATCTTAAGGGTCCCTTGAACACCAAGTACACTGGAGACAGAAAGGAGTTTGTGGAACACATAAGAAAAGCCCTGTATGCATCCAAGATAGTGTCCTATGCTCAGGGGTTCATGCTGCTGCGCGAGGCAGCCAAAGAATTAAACTGGAAATTAAATTATGGAGGAATAGCCCTCATGTGGCGAGGTGGATGTATTATCAGGAGTGTGTTTCTTGGGAATATCAAGGAGGCTTTTGAAAAGAATCCTAACTTACAGAACCTGTTACTGGATGATTTCTTCAAGAATGCCATCCACAGATGTCAGGATTCTTGGCGTAAGACAATAGCAGCAGCTGTTACTCTTGGCATCCCCACTCCAGCATTCAGTACTGCACTGGCCTTCTATGATGGATATAGAGCTGCTCGTCTTCCAGCCAACCTTATTCAAGCCCAGCGTGACTACTTTGGTGCGCACACGTACGAACTTCTATCGAATCCGGGCAGTTTTATCCACACTAACTGGACTGGCAAGGGAGGGTCTGTCTCCTCCACTACATACCAGGCCTAATGCGGACAAGAAACAAGTGATCGCAAATTGAAAGGAAAAGGATTGGGACCGAATTTGCAAAGTTAATCCAATTACCGAATAAGGAAGACCACATACGAATGAGTAAGAATACCAAGTTTGAGCATGTTTTGGTAAATAGAAACTGAATAGCAAGCTGTCAAGAGTCGCAAAAATATGCTTCCTCCAGTCCACTCAAACGTCTCTTATTTTAGCCTGAATTTCAGCCGTCGTACTCTTATTTCTGACCCTTTAAAAGCTCACCACATGGTAAATATCCAATGAACGTCCCGAAACTTAGTAAACTTATTAATTTCAATGTGCTATTTAGATTAACTTTACAAATCTAGCCCAGTCCTATTTTCGATTTGTTAGTAGACAATTAGAAAAGCAAGTGTTCACTTGATGAAGAAATATATTGAATGTGTATTTTACGCCCGAGCGCAACTATGTGTTTGGATAAAAGGATCACTAAAATTGCATTAGCATTCATTGATTTAACTTTAAGCTTGATATCTGTCAAATCAATTTAGAAGAATGTGTCTCAATTCAGCCCAACCTTCCAATATCAAAACTACATTTCCTGTTTCAAAAATCCCACATACTCGTCTGCTTCAGAGTTATCGACTCGATTTTCGAAATAGAAACGAAAGTTAGATTGTCGTAAACAGAAATTCACCATAAGTTTGAAGTGAGGTATGGTTTAACAAACTCGCAGTTTTAGGAGGTTTATTGAACGGCTGAAAAATCGATGTATGCTAATTAGTGTTTCGTATTTTTTATCATGTGAACTCGATTGCTTGTTGCAATGTAGTAGTTTGGTTCTCGTGAACCAATCGTTCGTACATGCGTAATTAGGGTCATTGCACCCTGGAATTAGATATGTCCAATAATATTCTCAGTATTAATCAATAAAAAGACGTAGAACTGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00393 all species →	6PGD	6-phosphogluconate dehydrogenase, C-terminal domain	Domain	Interproscan
PF03446 all species →	NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006114 all species →	Domain	6-phosphogluconate dehydrogenase, C-terminal	Interproscan
IPR006113 all species →	Family	6-phosphogluconate dehydrogenase, decarboxylating	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR006183 all species →	Family	6-phosphogluconate dehydrogenase	Interproscan
IPR006184 all species →	Binding_site	6-phosphogluconate-binding site	Interproscan
IPR006115 all species →	Domain	6-phosphogluconate dehydrogenase, NADP-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11811 all species →	6-PHOSPHOGLUCONATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004616 all species →	Molecular Function	phosphogluconate dehydrogenase (decarboxylating) activity	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009051 all species →	Biological Process	pentose-phosphate shunt, oxidative branch	Interproscan
GO:0046177 all species →	Biological Process	D-gluconate catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00033	PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase	EC:1.1.1.44 EC:1.1.1.343	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.