Gene detail

Detailed information of Acti_030686-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_1591:8813441...9010585
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_030686-T1

ATGTCCAACAACAATATATCTGTAATCGAATCCGGAGGTTTCCAAGACCTGACTGCACTGACACATATGAATCTGGACCACAATAACATCTACAAGCTACATACAGGAATGTTTGCAAGAATGAAGAGCCTGAAAGTCCTGAGTTTGTCTTACAACAAAATTACAGTATTGGTGAATGGGACATTTGGTGGACTATCTAAGCTTGGCCATCTATTTCTAGACAACAACAGCATATCTGCAATCGAACCCGACGTATTTAAAGACTTGGATTCACTGACTTATATGTTTCTGACAAAGAACAAGATTACAGTGTTGGAGGATGGGACATGGATAGGATTGTTGAAACTGAAGCTGCTGTCGTTGGATTACAATAACTTGAAAGTATTGCAGAATGGGACATTTAGAGGAATGCCTGATCTGCAGTACCTGTTTATTAACGACAACAATATAGCACACATATCAAGTAGGGCGCTTTATGGACTGAGTGGACTTAAACTTATAATGTTGTCCAATAATGATATAAAGGTACTAGAAGACGAAGCATTTTTAATAGTTAACAAGAGTCTCGAAACTGTATATCTGATGAATACAAAAATGGAAAAGATCAATGCTGCCGCATTTTGTCATCTCAAAGGCGTCGAAATCTACATTGATGTTATCCAAGAACTTCGTAAAATCCAAGCGAAAGGGATGCTCTATGCTGCTTTGACCGCGTCTGGTTTTGCAGAAGGAAAGGACGGTACAGAGAGATGGCCGTGCCCAGTCGGAAAGTATGTTAAACCCATGGGCACCATTAGTTACAAGGCAGCACTATATATGAACTGTGACGAATGTCCCGCAGGAGGATATTTTTCAGATTCAGTGGCTTACGTGGCAAAGGAGTGTAAACGGTGTAACGATGGAACATACGTGAAACCAGTAAACGCACCGGGAAAAAGTAGGAAAGACTGTGAAGTGTGCCCTCCAGGAACCCAAACAGATAAGCATGCAGGATACAGAGCATGTAAATGTCTGGATGACTTCCATCGCAGGGGTCGTTTTAAACGTTGTGAGACATGTCCAGATACCGGTCTCAAGTGCTCCAACGGATCAGTCTACGTAAAGCCTGATTTCTACTGGTACTGGGAGGATATCCAAAATTTTAAACAGTACGAGGATTTTGTAAAGGATCTAAATATTACGGGCGATGAATACAATAAATCATTGTTATATTTTAACGCCACTTTTCCACGTACCTATCCATGCCCTCGTAAGGGCACCTGCCTTGGAGGACTGAACATGGAGAACTGTGATACGGGATACATTGGCAAACTCTGCACGAATTGTAGTCGTGGATACTATAAAGGGGCGTCGAACTGCATCGAATGTCCAAATAACACAATAGTCTTTGTGGAAATTATAATAATTGTATGTCTCGTAGGTTTTGTTGTAGCGCTCATAATTTGGAGCGGGAAAAAAGAAAAGGAAAATCATAAAACTGATCGTCGGCTTATCGATATTTTCCTTTCACGACTAAAGATTTTAATCGGATTTTATCAGGTCACAACGGGAATTCTGAGTTCTTTTACGTCTATCAATTGGCCAGCTGGATTATCGGAAGTCGGTAACTTTGCAAAGAACATCCAGCTTGGCGTGCAGCAAGTCGCTCCATTATATTGCTTATACTCACCATTAGCACTTGATCCGTACCGCTCAATGATAGCATTTATGGTAACCAATGCTACTGTGGTGTTTATTGCTGTGGTGTTTTACTTTCTGAGAAAGTTAATCCTGAAAAGGCGAAAGGACCCAGAAAACAATGACAATGATATGGAGAAAACACTTTCACAAACAAAGGTTTTCCTGTACCGTAATGTCTTCCTCTTCTTGTTCACAACCTATCCCAGCACGTGTTCAGCCATCGTGCGCATCCTCCCTTTCGCCTGCCGACCACTGTGCTCCGAGAAAGGATGTCACAAGTATCTAAAAGTTGATCTGAACGTTAAATGTGAGGAGTACACAATCATTTCGTGTATTTTCCTCTTCTATATTGCTCTTCTTCCTGGCGTGGCGTTCATCATTTTAAAGAAGTATCGAAACAAGAGTGGTGTCGATGTGAAAAGAGATGCAGAAAAAGAGTCAAACCAACATCCGTGTAAGGGGCGTAGTTCCGAAGTAATGTGTATAAATGATGTTAAGTTTACTGTTGATATTGAAGTCGCAGAACCCTGGAAGCCCACTAAGTTGATATATTCTGAGTATGAGGAGGCTGTCAATAAGACGCCGGAAGTGATCACCGGAATGAGCTTCCTGTATGAGAATTACAAAGACGACGTCTGGTACTGGGAACTAGTGGAGATATTGCGCAAACTTATCCTGACAAGTGGTATCCTGCTGTTTGGTAAAGGAGACCATTCGTACATTGGTCTTGCTTCTATTGTCAGCGGATTATTCCTCGCCTGGTATGCGCACCGCAATCCTGTTCAGGACAGTTTTGAAGCTCTTCTGATGTTGTCATCTTTAGTCATCACTTTCCTAGACCTTGGAATAGGAGTGATGCTCACTATTTCCCAAGAGACAGAATCTTACGATGGTAACACGTTCTTAGAAGGCAGGCCAGCTGATTTCATTGTGACTGGACTGAATGTCATCATTATAGTGATTATTGGTGTTAAATACCTAGCAATAGTGATTCACAACTTCGTCGTTTGGAGACGGAACCCAGTTTGGTCCATTTCCTGCTGCCTAGCGATGCTACTGCCGGTGACTGAGGCCTCTGGGAAATTTAAAGGCATCGCAAAGAAAGGTCTGATGCAAAATCTCGAACTGGGCTGTATTGATGTACCCAGCGTGACAAATGAAATAGAGGGAAGAGAGATCATATCCCTCAAAATAAATGAATCAGAGAGAAATGGCAAGGTTCCACAGATGTTCGAAGCTTTGAAGATATTTCGAAGGAAGAAAAAGCATACTGAGACGAAAGATGAGTATGAACTAGTTGAACTCCGTGAGTAG

Transcript

Acti_030686-T1

GGGAAGGTTCTTCAGAAGAATCTCTGGGGAAAAGAGATAACCTGGACAGCAGATCGTTATCAATTTCCAGGTTCTGCGAGGATCATTTTTGCTGGAATGAAGACCCGTCATTGTCATAGTCAACGGACATGCGGAGCCTTTGCATTGACCGCACGCAGGGGAGCACTCAAGGCTGTTCTTGCGGCAAGTGCATCGCAAACTGCTACAGTCCGATGAACAGTTGCACCTGATCAAATGAAGGAGGGAGTCTGATCTGGCGCAGGAGGAATATAGACCACAACATTATATCTGTAATCGAACCCGGAGCTTTCCAAGATTTGATTGCACTGACAGACCTGAATATAGACCACAACATTATATCTGTAATCGAACCCGGAGCTTTCCAAGATTTGATTGCACTGACAGAACTGGATATAGGCAACAACAACATTTCTTTAATCAAACCCGGAGCTTTCCAAGACTTGATTGCACTGACATCCCTAGATCTTAGCTTCAATTCCATCGAAAAAGTGACGTATGCTTCCCTTAAAGGTCTTTCAAAACTACTGGAATTAGATATAAGGAACAACACGATATCTGTAATCGAATCCGGAGCTTTCCAAGACTTAGCCGCACTGGAATATCTAGACCTTAGCTTCAATTCCATCGACAAAGTGACATATGCTTCTCTCAAAGGTCTTTCAAAACTAGACATCTTGCTTATACACGACAACAATATAGCTGTAATCGAACCCGGAGCTTTTCAAGACTTGACTGCACTCACAGGGCTGAATATAGACAACAACATTATATCTGTTATCGACTCCGGAGCTTTCCAAGGTTTGACTGCACTGAGAGGGCTGAGTATAAATCACAACAGTATATCTGTAATCGTACCCGGAGCTTTCCAAGACTTGGCTGCACTGATACAGCTGCTGATAAACAACAACAGTATATCTGTAATCGAACCCGGAGTTTTCCAAAACTTGGCTGCACTGACAAAGCTATATCTTGGCTTTAATGTCATCGAAGCAGTGACGAATGCTTCTCTCAAAGGTCTTTCAAAACTACAGCAACTGTTGATGTCCAACAACAATATATCTGTAATCGAATCCGGAGGTTTCCAAGACCTGACTGCACTGACACATATGAATCTGGACCACAATAACATCTACAAGCTACATACAGGAATGTTTGCAAGAATGAAGAGCCTGAAAGTCCTGAGTTTGTCTTACAACAAAATTACAGTATTGGTGAATGGGACATTTGGTGGACTATCTAAGCTTGGCCATCTATTTCTAGACAACAACAGCATATCTGCAATCGAACCCGACGTATTTAAAGACTTGGATTCACTGACTTATATGTTTCTGACAAAGAACAAGATTACAGTGTTGGAGGATGGGACATGGATAGGATTGTTGAAACTGAAGCTGCTGTCGTTGGATTACAATAACTTGAAAGTATTGCAGAATGGGACATTTAGAGGAATGCCTGATCTGCAGTACCTGTTTATTAACGACAACAATATAGCACACATATCAAGTAGGGCGCTTTATGGACTGAGTGGACTTAAACTTATAATGTTGTCCAATAATGATATAAAGGTACTAGAAGACGAAGCATTTTTAATAGTTAACAAGAGTCTCGAAACTGTATATCTGATGAATACAAAAATGGAAAAGATCAATGCTGCCGCATTTTGTCATCTCAAAGGCGTCGAAATCTACATTGATGTTATCCAAGAACTTCGTAAAATCCAAGCGAAAGGGATGCTCTATGCTGCTTTGACCGCGTCTGGTTTTGCAGAAGGAAAGGACGGTACAGAGAGATGGCCGTGCCCAGTCGGAAAGTATGTTAAACCCATGGGCACCATTAGTTACAAGGCAGCACTATATATGAACTGTGACGAATGTCCCGCAGGAGGATATTTTTCAGATTCAGTGGCTTACGTGGCAAAGGAGTGTAAACGGTGTAACGATGGAACATACGTGAAACCAGTAAACGCACCGGGAAAAAGTAGGAAAGACTGTGAAGTGTGCCCTCCAGGAACCCAAACAGATAAGCATGCAGGATACAGAGCATGTAAATGTCTGGATGACTTCCATCGCAGGGGTCGTTTTAAACGTTGTGAGACATGTCCAGATACCGGTCTCAAGTGCTCCAACGGATCAGTCTACGTAAAGCCTGATTTCTACTGGTACTGGGAGGATATCCAAAATTTTAAACAGTACGAGGATTTTGTAAAGGATCTAAATATTACGGGCGATGAATACAATAAATCATTGTTATATTTTAACGCCACTTTTCCACGTACCTATCCATGCCCTCGTAAGGGCACCTGCCTTGGAGGACTGAACATGGAGAACTGTGATACGGGATACATTGGCAAACTCTGCACGAATTGTAGTCGTGGATACTATAAAGGGGCGTCGAACTGCATCGAATGTCCAAATAACACAATAGTCTTTGTGGAAATTATAATAATTGTATGTCTCGTAGGTTTTGTTGTAGCGCTCATAATTTGGAGCGGGAAAAAAGAAAAGGAAAATCATAAAACTGATCGTCGGCTTATCGATATTTTCCTTTCACGACTAAAGATTTTAATCGGATTTTATCAGGTCACAACGGGAATTCTGAGTTCTTTTACGTCTATCAATTGGCCAGCTGGATTATCGGAAGTCGGTAACTTTGCAAAGAACATCCAGCTTGGCGTGCAGCAAGTCGCTCCATTATATTGCTTATACTCACCATTAGCACTTGATCCGTACCGCTCAATGATAGCATTTATGGTAACCAATGCTACTGTGGTGTTTATTGCTGTGGTGTTTTACTTTCTGAGAAAGTTAATCCTGAAAAGGCGAAAGGACCCAGAAAACAATGACAATGATATGGAGAAAACACTTTCACAAACAAAGGTTTTCCTGTACCGTAATGTCTTCCTCTTCTTGTTCACAACCTATCCCAGCACGTGTTCAGCCATCGTGCGCATCCTCCCTTTCGCCTGCCGACCACTGTGCTCCGAGAAAGGATGTCACAAGTATCTAAAAGTTGATCTGAACGTTAAATGTGAGGAGTACACAATCATTTCGTGTATTTTCCTCTTCTATATTGCTCTTCTTCCTGGCGTGGCGTTCATCATTTTAAAGAAGTATCGAAACAAGAGTGGTGTCGATGTGAAAAGAGATGCAGAAAAAGAGTCAAACCAACATCCGTGTAAGGGGCGTAGTTCCGAAGTAATGTGTATAAATGATGTTAAGTTTACTGTTGATATTGAAGTCGCAGAACCCTGGAAGCCCACTAAGTTGATATATTCTGAGTATGAGGAGGCTGTCAATAAGACGCCGGAAGTGATCACCGGAATGAGCTTCCTGTATGAGAATTACAAAGACGACGTCTGGTACTGGGAACTAGTGGAGATATTGCGCAAACTTATCCTGACAAGTGGTATCCTGCTGTTTGGTAAAGGAGACCATTCGTACATTGGTCTTGCTTCTATTGTCAGCGGATTATTCCTCGCCTGGTATGCGCACCGCAATCCTGTTCAGGACAGTTTTGAAGCTCTTCTGATGTTGTCATCTTTAGTCATCACTTTCCTAGACCTTGGAATAGGAGTGATGCTCACTATTTCCCAAGAGACAGAATCTTACGATGGTAACACGTTCTTAGAAGGCAGGCCAGCTGATTTCATTGTGACTGGACTGAATGTCATCATTATAGTGATTATTGGTGTTAAATACCTAGCAATAGTGATTCACAACTTCGTCGTTTGGAGACGGAACCCAGTTTGGTCCATTTCCTGCTGCCTAGCGATGCTACTGCCGGTGACTGAGGCCTCTGGGAAATTTAAAGGCATCGCAAAGAAAGGTCTGATGCAAAATCTCGAACTGGGCTGTATTGATGTACCCAGCGTGACAAATGAAATAGAGGGAAGAGAGATCATATCCCTCAAAATAAATGAATCAGAGAGAAATGGCAAGGTTCCACAGATGTTCGAAGCTTTGAAGATATTTCGAAGGAAGAAAAAGCATACTGAGACGAAAGATGAGTATGAACTAGTTGAACTCCGTGAGTAGCGTAAAGCTGAAAATCGAGTTTCTGGAACAAATGTATACTTATTTCATATCAATAGATCGTTGTTAAAGTGTTTATGAAACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050328 all species →	Family	Multifunctional Developmental and Immune Receptor	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24373 all species →	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Acti_030686-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.