Gene detail

Detailed information of Acti_032908-T2 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_1591:78480922...78531515
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Acti_032908-T2

GACTGCAGAAACCAACTCTATGAATCATACAACCTGAATTTTATTACAGCCATCTCCCGACACAGACTAGAAGAGCTTGCTACCACTGCTTTGCAGACAAACTGTGTCACACAAATTTCAAAGATTTATGACCAATACCTAAACTTCATCTCTTTGGAAGATGAGATGTTTACAACAAGATTCCAGGAAAGGGATTCTATATCTTACTATGCCCTTAATAGACCTGATGCAAAGGATACAGATATTGAGTCACTAAGGGATGCTCTTGTTGATAGTTTGTTTTGTCTGCTGACATCATTGGGTACTGTTCCAATTATCAGATGTCCCAAGGGAAATGCTGCTGAGATGGTTGCTGAGGCTCTCGATAAAAAGTTGAGAGAGAACCTCAGGGACTCAAGGAATAGCCTTTTTACAACAGACATCCCATCTGGCCAGATCAGTTTTCAGAGGCCTGTTCTAGTTATTCTGGACCGTAACATGGACTTGTGTACACCCCTCCATCACACCTGGACGTATCAGGCCCTGGCACATGATGTACTGGAGCTCCATCTTAACAGAGTCATCGTCAAAGAGTCTCCTCCCACAATTGATGAGGAACATCCTGATGCACACCACAGACATCCCAAGCAAGTCAAAGTAAAAACCTATGAACTGAGTGGACTGGACAGATTCTGGAATGCACACAAGGGCAGTCCATTTCCCACTGTGGCAGAATCCATTCAGAAAGAACTAGATGAGTACAGAGCATCGGAGGAGGAGGTGAAGAGACTGAAACATGTCATGGGTATAGATGAAAATGACGAGGAGGTAATGGGAGAATTTTTGTCGGACAGCACAGCCAAGCTTACTTCTGCCGTCAGTTCTTTACCAGAGTTGCTTGAGAAGAAGAGGTTAATTGACATGCACACTAACATCGCCACGGCCCTACTGGACCATATTAAGGCGCGGAAATTGGACATCTTTTTTGAAACAGAGGAGAAAATCATGAGCAAGGCCACCCTGGATAAATCAATCCTGGAGGTTATACAAGACCCTGACGCTGGCACTGCAGAAGACAAGCTCAGATTATTCGTTATTTATTATGTTTCTGGACCAACCATGTCGCCGGCCGAGTTTGATCAATATGCGTCGGCGCTGCTGGCGTGCGGTGTAGAGCCAGCCGCACTTAGTTATATCAAAAGATGGAAGGCGTTCACCAAGATCACCACAGCTCCTCTGCAGTCTGGTGGAGGTGGACAGAACACTTACAGCGCCATGTTTTCTCGGATCATGAGTTCAGGGTCTCAGTTCGTGATGGAGGGAGTCAAGAATCTTGTTGTTGGAAACAAAAATTTACCAGTAACGCGGATACTCGACGCAGTAATGGAAAACAAGTCTAACCCGGAGGTTGAGGATTTCCGATATTTCGATCCAAAAATGCTCCGAGTTACCGATAGCATGTCTATCCCAAGGAACAAGACTCCTTTTCTAGAGGCGATAGTGTTTATGGTCGGTGGAGGAAACTTTATTGAATATCAAAATCTGATGGACTATGCAAAGAGAACTTCAGGAACTAAAAAGATTATTTATGGTGCCAGCGAAGTTTTAAATGCCACTCAATTCCTGAAACAGCTTGCTCGTCTTGGACAAGAAGCCCTCTAAAGCTGACAATTTCTGATAAAAGAATAATGATGATTTATGTGTTCTTCGTGGACATGAAAAACGGCGAAGAGAAACCCAGGCGAAATATATCGAGAATTAGTTCAAGGCCGAGCCGATTGGATATCTCCTCGTGGGTGGTTGATTCAGATTTGGCCCAACTTTGATGTTCACTGCAGTCAAGTTCTAAAGCTCGTTCTGTGTGATAAAAGCTTTATTTGATGCTTGATCAGGTAGAGACTGTTTTAGGGAGTTTCCAAGTTCTTGATTCTGATGATTTCGCAGATGTGGAACAGTTGAACTCTTTCTTTAGCTAGACTCGACACAACAAACTCGAAGAAGTTCAAAAGCTGAAATCGTTTTAACTGAAATCTATATAAAAAATAGTTATTTAATGTATATGGACTGGTATTAAATATACAAGGATTCAAAGTACTTCTGACGTCAGGAGATCAGTGAATTCCAAACATTCACAAAAAAGTGCACTTACAAAGTTTGGCAGTGTTCGCCGGGTGAAAGTGAGACTGACGAAAACAAAGCACTTCACCTATCAGTCTACCATACACGCTCCTAATAACAGTGTTCCAGGGTAAATAGTCAGAAAAGAAAAAGGTAGAGAGAGAGAAAAATGCGAGTTTTTTTTTATTCCGACCCCATAACCTGTCAAGTGATAACATCCACCCTCGAACTGCGAGAGATTTTCAGCTCAAGGCTTGATTAATGCCCAGTCCTTTATCGGCCAAGGGAAGTTTGGGTGTCTGTTGAGCGATTCCTGCCCAAAGGAGTGAGTTTGCAAGTGGACGACTGGTTTAAACCAATCACAGGCGTTCGCCTGTAAGTACTTTCTATTCAATCTCGTTCCCAGAGCCCGCGCGTTTTTCGGCCAGCGGTGACCAAACGCCACTGGCGCTGGCCAAAAGATCGCGGGCTCTGGGAACGAGATTGCTTTCTATCGAATCATAGAAAGTTGTAGTAAAAAAAATTCGCGCATAAAAGTTGCAAAACATTAGGAAGACTTCTTATTTGGATGTATAAATCCAGTTTCCTACTTGATTTCTAAAACACGGTATATTTGGCGAAAACCTGTGCTTATTCTTTTGAGTAATGACTCTTCTCAAATTTGTTCATATTTCCGAATTTCACGAGTCTTCCCATCACACGAAAGGAATCCAGTTTACGTACTTAACGTACAGCCTTTCTCATTCTAATCAGTCTGTCGTTCGTAAGTGTATTTAGTCCTGACCTGGCCCAGTCTCTCTCGACCGCTCCGTAGACTGGAAGGTCGCGGGAAAGTCCAGTAGATATTGCGTGCGCATGCTCCAAACTGTCCAATTAGGAATAAGGTCAAATTCGCGTGTTTACCGAATACTTTTTATTTGAAAGTTTAAAATGGCCGATAATCTCAGTGCAGAATATCTCGCAACTATGTCCTCCCGCAACACAAACAATTTCTTGCTTTAGAATCTTTATTACTTATAATCCTTCAGGTGAGAGCATTAACAATTTGTATTTACACAGATTATACATTTCTCCTTTAGTTTAGACATTTGATCATCCATCAGAGATACGAGTGGAGAAATTAAAATTATAATCGACGAATTACAAGTATGTTGTAGTGAAGATCTTAAAGAATCACTTACGAAAGTAAAGTAAAGTACAAACCAGCTACCTGCCAAACTCAGTGCTTAAGTTGACATATTCCCTTTACATAGATTAAATAATGCTTCTAGTTGTTCGAACTTTGGCACAAATTTATAATTGCACACTTTCAAGGCGTTCATACAACGCTATAATAATAATAAAAAATTGACAGGGTGCTCGTCACCGAAGTGTTTTTCAGAGAGGCCCTGTTACAACGTCGATACAATTCAGTAAACACCCGACTCGCATCGGATTCGCCGCCATGATTATGAGCTATGTAGCCAGGCAACACCACATTTTTGTGTTGTGGCCTGGTTACATTTTTGACTTGCGCACGCAATACCTACTGGACTCTTTCCCGCGACCTTCCAGTCAACGGAGCGGTCGACAGAGAGGCCAGGTCAGACTAAAGTCTTCCATATTACGCTAACTATGGGTTTAAAGGTCTGCCTCAACCTCCGTTTTAATGCCCTAGAAAATGGCCTCCAAAATGACTGATAGCGTGTGAGGTGCGCAGGACACTGGTCTACTCACTGGTCTACACAAACTCTAGTCTAAACAAACACTGGCCTAAACACTGGTCTACTCACTGGTCGAAACACTGGTATACTCACTGGTCTATACAAACACTGGTTTAAACACTGGCCTAAACACTGGTCGAAACACTGGTCGAAACACTGGTATACTCACTGGTATACTCACTGGTATACTCACTGGTATACACAAATACTGGTCTAAACACTGGCCTAAACACTGGTCTACACAAACACTGGCCTAAACACTGGTCTACTCACCGGTCGAAACACTGGTACACTCACTGGTCTACACAAACACCAGACCAATGTTTAGGCCAGTGTTTAGACCACTCACTGGTCGAAACACTGGTCGAAACGGCCCCTTTAAAAAGAGAGAAACCAATAGGTGTGCCAGGAGATAAACTAAGTCCCGAGTTAAAATTCGAGTGAAATTTTGAGTAAGATTTTCGAGTTGGATTCAGGCCTTCTGTTGGAAACAGACACTTTCTTTACTGGATGGCAAACAAACCGATCGACAATCGATTGGAGGTGGTAGAAAATGAAATTTACAACTGAACAGGTTTAGCTAATAACACTAATAATCTCGTACAATTAAGTGCCTGTATAAAATAAAGTCAGGTTTTTTTGCCATTGATCCAGTACAACCACGTGATTGCATTCCTGCAAAAGGCCCGGCTTTGCAAATTACAGAACAAACTGGGCTGATCGAAGATCGAGCCCCTTGGTGATACAGACTTCAGTTTGTAGCGTTGTGTTATCCTCATTCAAGTTTGATTTGAGCATAGTTAATAGAGTGGAATGGTTAGGAAACTCAGGGACCTTCTTTGTTATATGTCTTTGTTAGCTTTTTTCAAACACTACCGTGCACAAAACACAATAGAAATTCCAACATGTTAATCAATCAGCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995 all species →	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027482 all species →	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR001619 all species →	Family	Sec1-like protein	Interproscan
IPR036045 all species →	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR043127 all species →	Homologous_superfamily	Sec1-like, domain 3a	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11679 all species →	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19998	SCFD1, SLY1; sec1 family domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.