Gene detail

Detailed information of Acti_036614-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_1636:31244235...31318639
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_036614-T1

ATGGTTCGTCAACCTCGGGGTAATGCTCTATTAGTTGGAGTCGGTGGTACAGGCAAACAGAGCTTAACCAGGCTGGCGTGCCATATGTCTACGTACCGGTGCTTCCAGATCGAGCTCACTCGTGGATACGATTACAGCGCTTTCCGTGAAGACCTCAAGAAGCTCTATAACTTCGCAGGAGTGAATGGAGAGAACACAGTGTTTCTGTTCACTGACACACAGATTGTGGTTGAAGAATTCCTGGAAGACATCAATAACATCCTAAATTCCGGCGAGGTACCGAACTTGTTCGAGGCAGAGGAGTATGAACAAGTTCTGAATGGGACGCGACCACACGCTAAAGAAGCGGGAGTACCTGAAGGAGACAGGGATGGAGTGTTTAACCATTTCATCAGCCGTGTACGTAATAACCTGCACATTGTGCTGTGTATGAGTCCCGTGGGCGACGCTTTCCGTACTCGATGTAGGATGTTTCCCTCCCTTGTTAACTGTTGTACCATCGACTGGTTCACAGAGTGGCCAAGGGAAGCTTTGCTATCAGTGTCCATGAACTTCTTTGAAGAAGTCGACCTGGGAGCGGAAGGAGTCAAGGACAAGGTGGCAGAGATGTGTGTGGAGATACATACCAGTGTCAGCTCAATGGCTGAACGATTCTATGCCGAGTTACGCCGACGGTACTACACAACTCCCACCAGTTACCTGGAGCTGATTAACCTCTACCTCTCTATGTTAGAAGAGAAGAGAAAGCAACTCATAGGAGCACGTGATCGAGTCAAGAACGGCCTTAAGAAACTGCTGGAGACGAACGATCTGGTGGACACCATGCAGATAGAGTTGGTAGCCCTGGAACCACTACTGAAACAAAAATCACTTGACGTGGAGAAACTTATGGAGAAGCTACAGGTTGATCAGGACGAGGCGGATAAGGTGAGAAAAGTGGTACAAGCAGAAGAAGCCGTGGCTAAAGAGAAGGCAGACGAGACACAAGCGATTGCTGCTGAGGCCCAGAGGGACCTGGACGAAGCCCTTCCCGCACTCGAGGCGGCTCAAAAGGCACTGGATTCTCTAGACAAAAGTGACATCTCTGAGCTACGTGTGTTTACCAAGCCACCCGAGCTTGTAATGACTGTGATGGAGTCTATCTGTATCTTGCTTGGAGTCAAACCTGATTGGCCATCCACAAAGATCATGCTGGGAGATTCGGGATTTCTGAAAAAGTTGATGGACTACGATAAGGACAAAATCCCCGAATCGACACTAAGAAAACTCAAGAAGTACATCGACAATCCCAAGTTTGTAGTTGAAGTGGTCGAGAAAGTCTCGAAGGCATGTCGTTCCATGGTAATGTGGGTGAGAGCAATGGACCTCTACGCCCGGGTTTACAGAACCGTTGAACCAAAGAGACTAAAACTGGGTAATGCCCAGGCTGAGCTGGACGCTGTGATGTCTACGCTGAGAGACAAGCAAGCCAGTCTAGCGAAAGTGGAAGGAAAGATCGCTGAACTTCAGGCAGCCTATGACCACAGTATCGCTGAGAAGGAGACGCTGACAAAGAACATCGCTCAGACGGCTGCAAGGCTCAAGAGGGCTTCGAAGTTGACCACCGCTCTTGGCGATGAACAAGGCAGATGGACAGAGAACGTCGCGGCGTTTGAACTGGAGATTGGTAATGTTGTGGGCAACGTTTTTGTGGCTGCAGCCTGCGTAGCGTATTTCGGTGCCTTCACGAGTCTGTATCGACATGAACTTATCTCTTCGTGGATAGAACACTGTAAGGACCTCGGTGTTCCAGTCTCAGAGGACTTTAGTCTCATTAACGTACTGGCCGACCCTTATGAGATCAGGCAGTGGAATGCCGATGGCCTTCAAAGAGACTCGGTGTCCATCGAGAACGCCATCCTCGTAACGCGAGGACGCAGGTGGCCTCTGATGATCGATCCACAGGACCAGGCCAACCGATGGATTCGCACTAAAGAGGCGAAGAATGGGCTGAAGATCGTTAAACTGACTGATAAAAACTTCCTGAGGACCCTAGAGAATTGTATTCGTATTGGTATGCCAGTACTGCTTGAGGAAGTGGAAGAAACTCTAGACCCTGCATTGGAACCTATCCTACTAAAACAGACATTTGTACAAGGTGGTCGCATGCTCATTCGTCTCGGAGACAGTGACATTGACTATGACAAGAATTTCCGTTTCTACATGACAACCAAACTGTCCAACCCTCACTACCTCCCTGAAGTGTGCATCAAGGTCACCATCATCAACTTTACTGTGACCAGGTCCGGTCTGGAGGATCAGTTACTGAGTGACGTTGTCCGTCTAGAGAGACCCGATCTGGAGAATCAGCGAAATCAGCTCATCGTACGCATCAACTCCGACAAGAACCAGCTGAAAGCAATCGAGGACAGAATCCTGAAGCTACTCTTCCATTCAGAGGGTAATATACTGGACGATGAGGTGCTCATCAATACGTTAAACGAATCGAAGGTAACATCAGGTGTCATCAGTACTCGACTAAAGGAGGCCGAGATAACAGAAGAGAAGATATCACAAGCCCGTGAGAAGTATCGACCAGTGGCGACAAGAGGATCTGTTATGTACTTCGTGGTAGCGAGCCTGGCTGAAGTGGATACTATGTACCAGTACTCGCTTAAGTATTTCAAACAATTGTTCAATAATTGTATTGAGAGCAGTGAGAAGACAGACGACTTGGACAAGAGATTGGAAATCCTGCTCAATAACTGCACCAAAACTGTGTATGTCAACGTGGCAAGAGGTCTGTTCGAGAAGGAAAAGCTGGTGTTCTCGTTCATGTTGTGTGGCGACATCATGAGACAGCAAGGGGTTATCACAGATCCCGAGTGGAATTACTTCCTGAGGGGTAGTGGCGGCCTGGATAAGGAGCGACTACCTAAGCCTGATCTTCCGTGGCTTTCTGAGACCATGTGGAACACGTGCTGTGATCTGGAGGACACTCTACATTCGTTCGAGGGCCTAAAGAAAGACTTCACGAATATACCAATAACTATTACGATGGGAAGCCTTAAAGTGTGTCCTAATGCCGCTGTGAGAGGCGATGAAGACGAAGAAGACTCAGATTCAAGCGATGAGGAAGATGAAGATGATGAGGAGAAGCAGAAAAGCTGGCAAGACAGACTCACCAGCTTCGAAAGGCTCATATTCATCAAAGCATTTAAGGAAGAAAAGGTCGTGTTCGCTGCAGTGGATTTTGTCAGTGATAATCTCGGCAAGACGTTTGTAGAGAGCCCATCTATCGACCTGCCTGTCCTGTTTGAGAACGTAGCACCCACCATTCCGCTAATCTTCATCCTGTCCACTGGGTCTGATCCCATGAACGCCTTCCTCAGATTCGCTAGGGACATGAACTACACTGAAAGGATTCAAGCAATCTCTCTTGGACAAGGCCAAGGGCCCGTGGCAGAAAGAATGATAGCCAGTGCTTCCAAGAATGGAGACTGGGTGTTCCTTCAGAATTGTCATCTGGCCGCCTCTTGGATGTTGGGTATGGAGTCCACCATCAAGAATCTGTCGAACCACGATGCTGAGGTACATGAGGACTTCAGGTTGTTCCTCAGCTCCATGCCAACAAAGGCGTTCCCTGTTACTGTACTACAGAACAGTGTCAAAGTCACGAACGAGCCTCCAAAAGGACTGAGGGCCAATACCAAGAGAGCCTTTGGAGAACTGATGCCAGATCCTTTTGAGAATCACGTTCTCGGTATGTCCTGGCGTAAGCTGGTGTTCGGCATGTGTTTCTTCCATGCCATCATCCAAGAAAGAAAGAAGTTTGGTCCTCTTGGCTGGAACATCAAGTACGAGTTCAATGACTCGGACAGAATGTGCGCCCTGGAGAACTTAAAGATGTTCCTGGTCGATGACCAGATACCGTGGGACGCTCTTACCTTCATTACTGGAGCGATCACTTATGGCGGTCGAGTCACTGATGAGTGGGATCAGCGTTGCCTCGCTACTATTTTGGGACGGTTTTTCTCGCCTAATATCCTGCAAGATGAGTACAAGTTTTCCGATTCCGGAATCTACTTCCCACCTGGCTATGATACTCTCAAGGAGTACAGAGCGTACGTCGATAACTTGCCACCCTCGGATGAGCCTGAAGTGTTTGGTATGAACGAGAATGCTAACATTGCCTTCCAGACACAAGAGACCCACCAGTTGATATTCACTATACTTGAAGTTCAGCCGCGCCTGGCAAGTTCAGGAGGAGGCAAGACTAGCGACGAGATAGTCTACGAGCTGGCGGATAGCATCATGGCCAAGCTGCCAGACATGTTTGATATGGAGAAAGGAGACAAGGCACTCTTTGAGACGGACGAGAAGGGAAGGTATAACTCGCTCACCACCGTGCTGGGCCAGGAAGTAGACAGATTCAACAACTTACTCAAAGTGATCAAGAACTCGCTCGGTCAGCTCCAGAAGGCTATCAAGGGTTTAGTGGTGATGTCACTGGAACTGGACAAGGTCTACACGAGTTTCCTCAATAACCAGGTTCCCGACATGTGGGCCAATGCTGCCTATCCATCACTAAAGCCTCTGGGGTCTTGGGTCAAGGATTTAGTCTTCAGAACCATGTTTATTGACCAATGGATCATTCATGGTCCTCCAAAGTCGTTCTGGATCTCAGGATTCTTTTTCCCCCAAGGTTTCCTAACAGGAGCCCTCCAAAACCACGCCCGTAAGTATAACCTGCCCATCGACCAGTTGTCGTTCCATTTCAACATTCTGCCAGATTATCGACACCAAGAGGAGATTGCCGAGGAGTCTGCTAAACTGGAGTACGGACAGACACTTCCTATGGACGAAGACTTCGAGGCACCCGAGGATGGGGTAATGGTGCATGGCCTGTACCTGGACGGGGCTCGGTGGGACGATGATAAGATGATGCTGGGGGATGCGTATTACGGAGAAATGAACCCGCCATTACCCATACTGCACATGGAACCCCAAATGAACTTGACCCCAGATCCCACGCAGTATAAGAGTCCTCTCTACAAGACATCAGCCAGGGCTGGCGTGCTCTCGACTACAGGCCACTCCACCAACTTTGTGGTCGCTGTGTATCTACCAACAGACATACCACAGTCCTACTGGATAGAGAAGGGAACTGCACTGCTATGCCAGTTGAATGAATAA

Transcript

Acti_036614-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12777 all species →	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan
PF18198 all species →	AAA_lid_11	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF18199 all species →	Dynein_C	Dynein heavy chain C-terminal domain	Domain	Interproscan
PF12780 all species →	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF12781 all species →	AAA_9	ATP-binding dynein motor region	Domain	Interproscan
PF03028 all species →	Dynein_heavy	Dynein heavy chain region D6 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042219 all species →	Homologous_superfamily	Dynein heavy chain AAA lid domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024743 all species →	Domain	Dynein heavy chain, coiled coil stalk	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR043160 all species →	Homologous_superfamily	Dynein heavy chain, C-terminal domain, barrel region	Interproscan
IPR041658 all species →	Domain	Dynein heavy chain AAA lid domain	Interproscan
IPR041228 all species →	Domain	Dynein heavy chain, C-terminal domain	Interproscan
IPR024317 all species →	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR035706 all species →	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan
IPR004273 all species →	Domain	Dynein heavy chain region D6 P-loop domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46961 all species →	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10408	DNAH; dynein axonemal heavy chain	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.