Gene detail

Detailed information of Acti_044795-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_1753:30616832...30633479
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acti_044795-T1

ATGGGTGACTTTTCTGATGAAGAGGATGATGGCATTTCACCATACAGCCCACCCAAGACAATAGTCCTTCAAGAATTTAATGATCGTTTTGAAAATGCAGTAAAGTACATTAGCAGCCAGAGAGTGGTAGGAGTGTCTTGCGAGGGAGTCAAATTGGGAAGATATGGCAAAGTTTGCTGGATTGGGATTGGATGCAGACACTTTATTTATCTGTTTGACATACTAGCACTTGGTGCTTCCTGCTTTGATGAAGGACTTGGAGAAATTCTTGAAAATGGAAATCTCTTGAAGGTATTCCATGACTGCCGTCAAGTCAGTGATGCCTTGTACCATCAATATTCAATCAAGCTGGTTAATGTCTTTGATACCCAGGTTGCAGATATTATAATTTACAAGAAAGAGAAGGGAGAATTGCCAGGTGTTGTTAACGGTCTGGTGGCATGCCTGTACGAGTACCTCAACATTTCACCAGAGCAATGTCACTTCCAAAAAGTCAGAGTAAACCATATGAAGAAGGATGAAAACGTCTGGTCCAGAAGACCATTGCCAGAACAACTAAGAGATGCTGCTGCCAAACGAGTGATGTATTTGCGTGAGTTGCGTTTACCCCAGATGGAGAGGATGATGGCGGACTTTATCTATGGTGTGGATATCTATCTCGGTGTGGTGAGGGATAGTAAGGACCCGAAAGTCAAGCCAAAGCATCCGGACAAAGTACGGCTAGTGCCTCAGCAATTTCGGGACGTCAACAAGTTTGACCACCAACGGCGGCTGAGGCGCTTTGACGAAGATTTTCCCGACGATTTGGACACAGCCGTCCATGAGAGCATTACACCTGCTCCGAATCTGTGGCAGGAGGGGCAGCGGTTTTCCGAAGACTACTACAACAAGTTTGGCAGGATAAAAGAACAGACCATGGAACCGATTGATATGGGAGCATTTTCTTCAAGACGTGATACGGAATCTGAAGACAGCAGTAGAACCCCAGCGGAGATCAATGCTCGGAGTTCTCCTCCCATGCCTTCAAGATATGAGCTTCAAGGGGGAACTCATCAAGCAAAAACAGGAGTACCAAATGGGTCTTTAATGGAACATGGGTCTAACTTTGGACATGGTAGATTTGACAGCAACCTTGCCCATTCAGCACCATTAAGTGATGTTCCTGTAGCGAGTAATCTCGAGCTAACGTCTCGCCCTGATCGTGGTCTTGGTTCTGGTTACCATAAACTCTTTGGTAAACAGGACGCAGGGTTCGGTCATGGAGACGGTGTTTTCAAATTCAAGGAATCGGATATCAGTGGAGTGGCGCCTTCTGTCGAGGAGATGCCGTCTGCCGCAACACATCAGTTAGACCAACGCGATGCCTCGAACTCGTTATATCAGTCCGAGACTCTGCAGACTAAGCCACCACTTATAAGAATATCCGAGCGAGAATTGAATGCTGGTGTCGTGAATGAAGGCTCCAACAGTGCCCTGGATGACTTTGCTCGCAGTTACCAAGGGTCGTCTAGTTTAACACCAGCGCCATCAAATACGGTAGTACGGACATCAAAGTTAAGTTCTAAATCACATAATCCAGTGGGGATATTCATCGATGAAGACTTTCCGCCTTTAAGTAGCTCGGACTCGGAAGGATCCTTCTCTACAACACCTCCTCGAACCAGTAGACCCTTTAATACTCAACCCACAGGTATTGGACATGGTGCCCGCGCACGCGAGGACACGCGACCAGCCTCTCCGTTGCCACTCCACCAGTCACCCCTAGTGGGTGACTCTGCTATGTTTCTAGGTCGTGGGCGCGCTAGTTTGTATCAGCGCCTCGCTTTCATGCCCCAGGCGAGACTGCCAGCAGAGAACGAGCGTGTCGTTGCCAATAACTACGAATTGAGGACCAGGAGGTTCGACTTCCCCCCTGATGATGAACTGCTAGCAACGCCAGAGGTTACCAGTGTAGCAGAGCCTGCAATGACTGGAGGGACTCGTGTTAGAATCAGAAAACTATAG

Transcript

Acti_044795-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052144 all species →	Family	piRNA biogenesis EXD1-related protein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46628 all species →	PIRNA BIOGENESIS PROTEIN EXD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:1990923 all species →	Cellular Component	PET complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Acti_044795-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.