Gene detail

Detailed information of Acti_047357-T1 in Actinernus sp. WN-2022

Genomic Location: ScLC4GM_1591:52473389...52477063
NR annotation: no NCBI-NR hit recorded
Species Actinernus sp. WN-2022 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Acti_047357-T1

TCTGTAAATCGACTGCAGAAAAACCGAGGTAACCCAAAACAAATCGAGTGTTATCGCTGTGGAGGGAACCACAAAGCATACGAGTGCAAATTCAAAGAGTCAATTTGCCACGAGTGTGAAAAGAAAGGTCATTTGGCTCGACAATGCCGCAGCAAAACCAAAAGCAAACAAGAAAATAAACCAAACAAAAACAAGGCTAGATATCAGAGCAACACCAAGTCAACTAATCTACTGGACCAAGAGACCGATGACGACATATCAGGCGAGTACTCAATGAACCTGTACAATTTAGATGATTGTAAGGTAAAACCTTTAGAGGTTGACATTTGCATTAATGGTCATGATCTTACAATGGAAATAGACACTGGTTCTGCAGTAACTGTAGTGAATCAGAGGGTTTGGGCAAACCTATCAAGAGGAACCACTCAGATTACACTGAACCCAAGCAATCTGAAGCTGAAAACCTATACTGGGGAGGATGTAGTAGTCCTTGGGGAAGCTGAAGTCCTAGTAAACTACCAGGGCCATGAGTATAAGTTACCGGTTGCAGTAGTAGAGGGCAACACCCGTTCACTATTGGGCAGAAATTGGCTTCAAGTGATTACTTTGAATTGGTCTGAAGTATTCAGACTTCAGAACAGTGTTGAAACACCTAACTTTGCAGAAAAGTTCCCTACGTTGTTTCAGGGAGGGTTAGGAACCTTGGTTGGTGAGAAGGCAAAAATTCATGTTGACCCCCAGGCAAAGCCAATTTACTGTAAAGCAAGGCCAGTTCCATACATTCTGAAAGAGAAAATTGAGAAAGCTCTAGAGAAACAAGTAGAAGAGGGGACTCTGACACCTGTTCAGTTTAGTGAGTGGGCAGCACCCATAGTACCCATTGTGAAAGAAGATGGGAGTGTTCGCATTTGTGGGGACTATAAAATTACGGTGAACAAAGTGTCCAAACTGGACAATTATCCTATTCCCAAATCTGAAGATTTGTATGTCACATTAAATGGTGGTCAGCAGTTCACTAAATTAGACATGAGTCAGGCCTACCAGCAACTTGAGTTGAGTGATGCGAGTAAGCAGTTCACAACCATAAATACTCACAAGGGACTGTTCAAGTATAATAGGCTCCCTTATGGAATCTCAAGTGCCCCGGGAATCTATCAGAGAGTGATGGAAAACCTCTTACAGGGTATCCCTTATGTAGTGGTTAGGGTGGATGACATTTTAGTGTCTGGCAAAACCAGAGAAGAACACATTACTCATCTGGAGGAAGTTCTTAATAGACTTTCTAAGGCAGGTCTCCGACTTAACCAGAAGAAGTGTATCTTTATGGCAGATGAAGTCATCTACATGTACTTAGGACAAAGGATCAACCGTGAAGGTATCCAACCAGTGGAGGAAAAGGTGAAAGCGGTAACAGAGGCTCCAGCCCCAGAGAATGTAACACAGCTGAAGTCATATCTGGGAATGCTGAATTACTACCACCGCTACTTACCCAATCTTGCTACAGAACTCCATCCACTCTATAAGCTGCTGCATAAAGAGACACCTTGGGCATGGAAAAGTGAGCAAGAGGCAGCATTTGTGAAATCTAAGGACTTGCTGAAGTCATCACAACTGCTAGTACACTTTGACAGTACAAAAAAAGTGCTTTTGTCCTGTGATGCATCGCCATATGGCTTAGGAGCGGTTATTGCACACCGGATGGAAGACGGATCAGAACGTCCTATTGCTTATGCGTCACGTACTTTACAGCCAGCAGAGAAGAATTACTCACAGGTGGAAAAGGAAGGACTTGCCATAGTCTTTGGGGTTAGGAAATTTCACCAGTACCTGTATGGCATTCCTTTCACCATCTACACTGATCACAAACCCCTTCTAGGTCTGCTTGGAGAAAGCAGGCCCATTCCCAGCATGGCAGCAGACAGAGTCAGGAGGTGGGGTTTAATGTTGGCCTCGTATGAGTACCACCTACAGTACAAGAAGGGAGAGGAAAATGGGAATGCTGATGCCCTGAGCCGATTACCTCTCGAGGAATCTATCAAAGTTCCCAAGCTAGGAAGTACCATATCTCTGTTGGAGGAACTAGAGACGACTCCAGTTAAAGCAGAAAACATCAAACAATGGACAAGTAGGGATCCATTGCTAGCGAAAGTGATGCGCTATACACTATGGGGTGGCCCAGGAAGCTTCCTGAAGAAGAAGAGGACCTCAAACCTTATCATAATCGCAGGTACGAACTTAGCGTAGAAGATGGATGTGTAATGTGGGGACAGAGGGTTGTGAAATCTTGCTGGAAGAATTGCACATTGGTCGTCCAGGAATGTGTAGGATGAAAGCTCTGGCTCTCATTAATAATGAACTTGAGTCTAAAGTAAAGAGCTGCAATGAGTGTCTGCTGAACAGAGACAACCCAGCTGAAGCACCACTCCATCCCTGGGAATTCACCCATAGACCCTGGTCTAGACTACATATTGACTACGCTGGTCCATTGGAAGGCAAGATGCTGTTAATAGTGGTCGATGCGTACTCCAAGTGGATTGAAGTGCATGTAATGAACACTGCGACAGCAGCTGCAACCATAGATCGGCTGCGTCTTACATTTGCGACTCATGGATTACCTGATGTAATTGTAAGCGACAATGGAACCAACTTTGCAAGTAGCGAGTTTGCAGAGTTTATGAAGAATAATGGTATCAAACATGTGCGCACTGCTCCCTACCATCCAGCGTCAAATGGACAAGCGGAGAAAGCTGTCAAAACAGTAAAGGAGGGGCTAAAAAAGCAGCATGGTGGAAATATGGAAACTCGATTGGCTAGATTCCTTTTTCAGTACCGTCTGACACCGAACACAACTACTGGACAGTCACCAGCTGAACTCCTGATGAATCGTCGACTGAAGTCTCGATTGGACTTAATCCATCCTGATGTGAGAAGACAAGCTATGCAGAAACAGACTGAGCAGAAATATCAACATGACCGACATGTCAAGGAGCGGAACTTCAACCCTGGAGATCCAGTGTTAGTAGCCAACTACAGTAAGCTAAAAAGAGACAAATGGATACCAGCAGTGGTCACTAGCCAGACAGGACCTGTATCATACACTGTCCAGACACCCGAGGGACAGTTGCCAAGGAAACATCAAGATCAAGTTCTTACCAAAACCAATCCTAAAGAGCTCGTGCAGAGCTGCATGTGGAAGAAGACTCCTCATCAGATGTTGTGGTCGTCAAACCCACTCCGGAAGCACACAATGCCAAAGCTGACCCTGTGGTGAAGGGAACTCAGACAGCACAGTCTTCAACGGAAATGAACACTGGAGAAAGTGCAACTCGATATCCAAGGAAGTGTCGCAGAGCACCGGGCTATTTGAATGACTATGCGGTCTAGGAACTTTACATTGTTATTGGAACTTTGACATTATAGTCAGTATTGGACTGAGACTGATAGAAGGCGAATTGTGTTAATGTTATTTTCATTAGAGACACTTAACTAAAGGGGGAGGAATGTAGTATTTCCATGACGTAATGTTTTCCCGCCAAGTTAGTCACGTGACAGTTGTTGACCGGGCAGCCATTTTGTAAAGTGCTGTATCTCATGTGTGCTCAAGTTAGAAGTAAACCTACGGATATTACAGGTTTTATCCCAATTAAAATTCTTCAAATAAAGAATTTTAGAGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

No Gene Ontology signature was detected for Acti_047357-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Acti_047357-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.